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Name : YpsIP31758_0614 (YpsIP31758_0614) Accession : YP_001399606.1 Strain : Yersinia pseudotuberculosis IP 31758 Genome accession: NC_009708 Putative virulence/resistance : Virulence Product : fimbrial usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 724708 - 727188 bp Length : 2481 bp Strand : + Note : identified by match to protein family HMM PF00577 DNA sequence : ATGAGAATAATTAAAAAAATTCCTATAGCAATGACTACATCATTGATAATGCTCAGTGGAACAGCCAGTGCTATTGATTT TAATACTGATGCAATGGATGCCAACGACAAACAGAATATTGATCTTTCTCATTTTACGAACGTTGGCTATATCATGCCGG GTGAGTATCGGTTGGAGATCAATGTCAATAATCACCGTATTCCTGAGCAGGTGATCGCTTTTTATACCCGTGACGATGAA CCGGATAGCAGTGAGGTGTGCCTACCGGAAGCGGTGATGGAGCAGTTTGGTCTGAAGCCTGATGTGCTGCAAAAGATCAC ATTCTGGCATGAGGGGCAATGCGCAGATTTGCGTGAGCTGGCGGGATTAACCACGGAGGTTGATTTAGCGACCAGCACGT TAGCTATCAATGTCCCGCAAGCCTGGATGGAATACAGTGACAGCAATTGGGTGCCGTCTTCTCAATGGGATGAGGGGATC CCTGGGTTTCTGTTGGATTACAACGTGAACTCGCTGTTTAGTAAGCCGAAAGAGAGTGGTTCCACCCGGAATATCAGTCT CAACGGTACGTCGGGTCTGAATGCGGGTCCCTGGCGGTTACGGGGCGATTATCAAGGGAACTACAGCCACAGCAGTGGCG AGTATAACTCGTCTACCAGTACATTTGACTGGAGCCGGATCTATATGTACCGGGCGATCAAATCACTGGCAGCCACCTTG AGCGTTGGTGAAAACTATTTCGCCTCCAGCCTTTTCGATACGTTCCGTTATGCTGGCGCCAGTTTGTCCAGCGATGAACG TATGTTGCCACCTAATTTACGCGGTTATGCCCCTGAGGTTAGCGGGATAGCCAGAACCAACGCCAAAGTGACGGTCTCCC AGCAGGGGCGCATACTGTATCAAACCACCGTGGCTTCCGGCCCTTTCCGTATTCAGGAACTGAGTGATTCTGTTTCCGGG CGGTTGGATGTCAGCGTGGAGGAGCAGGATGGGACGGTACAAACTTTTCAGGTGGATACTGCCGCAGTTCCTTACCTGAC CCGGCCTGGTGCCATCCGCTATAAAACATCGGTGGGCCAGCCCTCTACTCTGAATCATGGGACTGAAGGCCCGGTATTTG CCAGTGGCGAATTTTCTTGGGGGGTCACTAATAGCTGGTCACTGTTTGGCGGGGCCATTGGCTCGGGTGATTACAATGCC GTGTCGGTCGGGGTTGGCCGTGATTTATATGCATTTGGTGCCATTTCAACCGATATCACCCAAACCCGTGCATCGGGCCT CCCCAACCAAGATACGCAGAGCGGAAAATCGTTGCGCGTCAGGTATGCTAAGCGTTTTGATGAGCTGAACAGCGACATCT CGTTTGCGGGGTACCGTTTTTTTGAACGTGAATTCATGTCGATGAATCAGTATCTCAACACCCGTTATTTTGATAATGAC CTTGGGCGCAACAAGGAAATGTATACGGTGACGGCGAGTAAAAATTTTCCTGACATCCAGACCAATGTCAATTTTTCATA CAGCTACCAGAATTATTGGGATCAGCCCACGTCCAATAGCTACAGCGCGACGATCAGCCACGCTTTTGATGCTTTTTCTC TCAAAGATATGACGGTCAACCTTTCTGCCAGCCGTAGCAAAAATAACGGCGTGAATGATGATGTGCTGTATCTGAGTTTT TCGGTGCCATTAGGCAATCAACAAACCCTCAGCTACAGTGGGCAACATAATGGTCAAGGGAACAACCAGACCGTGAATTA TTCTAACAGCTCGGCTATCGACAGCAGCTATCGGTTATCCGCAGGGGTTAACAACAGCAATGATAATGGGGCGCGTAGCC AGTTCAGCGGTTTTTATATTCATCGCAGCAGCATTGCTGAAACCAGCCTTAATGTCGCTTATGCGCAGGATGATTTTACC TCGACCGGGGTTTCTATGCGCGGGGGCGCGACGGTTACTGCGAAAGGTGCGGCATTACACGGCCCCGGTATGAGTGGTGG TACCCGCCTGATGGTCAATACCGATGATATTGCAGGCGTCCCGCTGGAAGAGCGGAATATTCGTTCAAACCGTTTTGGTA TTGCTGTGCTGAATAATATTAACAGCTACTATCGTACAGATACGCGTATCGATATTAATCAGTTGGCTGATGATGTTGAA GTTAAGCAATCTGCGGTGGAGTTTGCCCTGACCGAAGGGGCCATTGGTTATCGCCGTTTCGCCATGATGAAAGGGGAGAA GGTACTGGCAACTATCAGCCTGACTGACAGTAGCCATCCGCCTTTTGGTAGTTTGGTCATGAGTGCCAAAGGGCAGGAAC TGGGGATTGTTAGCGATGACGGTTTTACTTACCTGAGTGGAGTGGAGCCGGGAGAAACACTGAATGTACTTTGGAGTGGC GCTAAGCAGTGCCAGGTGGCGATCCCAGCAGCATTACAGCCGCAGGCGCAAATATTATTACCCTGCATATCCGTTAACTA A Protein sequence : MRIIKKIPIAMTTSLIMLSGTASAIDFNTDAMDANDKQNIDLSHFTNVGYIMPGEYRLEINVNNHRIPEQVIAFYTRDDE PDSSEVCLPEAVMEQFGLKPDVLQKITFWHEGQCADLRELAGLTTEVDLATSTLAINVPQAWMEYSDSNWVPSSQWDEGI PGFLLDYNVNSLFSKPKESGSTRNISLNGTSGLNAGPWRLRGDYQGNYSHSSGEYNSSTSTFDWSRIYMYRAIKSLAATL SVGENYFASSLFDTFRYAGASLSSDERMLPPNLRGYAPEVSGIARTNAKVTVSQQGRILYQTTVASGPFRIQELSDSVSG RLDVSVEEQDGTVQTFQVDTAAVPYLTRPGAIRYKTSVGQPSTLNHGTEGPVFASGEFSWGVTNSWSLFGGAIGSGDYNA VSVGVGRDLYAFGAISTDITQTRASGLPNQDTQSGKSLRVRYAKRFDELNSDISFAGYRFFEREFMSMNQYLNTRYFDND LGRNKEMYTVTASKNFPDIQTNVNFSYSYQNYWDQPTSNSYSATISHAFDAFSLKDMTVNLSASRSKNNGVNDDVLYLSF SVPLGNQQTLSYSGQHNGQGNNQTVNYSNSSAIDSSYRLSAGVNNSNDNGARSQFSGFYIHRSSIAETSLNVAYAQDDFT STGVSMRGGATVTAKGAALHGPGMSGGTRLMVNTDDIAGVPLEERNIRSNRFGIAVLNNINSYYRTDTRIDINQLADDVE VKQSAVEFALTEGAIGYRRFAMMKGEKVLATISLTDSSHPPFGSLVMSAKGQELGIVSDDGFTYLSGVEPGETLNVLWSG AKQCQVAIPAALQPQAQILLPCISVN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 0.0 | 51 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 0.0 | 50 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 0.0 | 50 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 0.0 | 50 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 0.0 | 50 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 0.0 | 49 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 0.0 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| YpsIP31758_0614 | YP_001399606.1 | fimbrial usher protein | VFG0884 | Protein | 0.0 | 50 |
| YpsIP31758_0614 | YP_001399606.1 | fimbrial usher protein | VFG1548 | Protein | 0.0 | 50 |
| YpsIP31758_0614 | YP_001399606.1 | fimbrial usher protein | VFG0895 | Protein | 0.0 | 50 |
