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Name : gabD (YpsIP31758_0422) Accession : YP_001399415.1 Strain : Yersinia pseudotuberculosis IP 31758 Genome accession: NC_009708 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : 1.2.1.16 Position : 500065 - 501534 bp Length : 1470 bp Strand : + Note : identified by match to protein family HMM PF00171; match to protein family HMM TIGR01780 DNA sequence : ATGCCCGCACAAAATCCTTTACAACATCAACGACAGCACGACGGTATATACCACATTGGCTATTTTGTCGGTGGAAAATG GTCTCAGGCACAGGAGCAATTTGACGTCTGCAACCCGGCAACCGGCGAGCTGGTCGCCAGAGTGGCTAAATCCGGTAAAC AAGAAACCGAAGCGGCGATTAAAGCTGCCAGCGAGGCTTTCCCTGCCTGGCGAAAAACGCCCGCTAAACAGCGAGCAGAG ATTTTACAGCGTTGGTATTTGCTGATAATGGAACATCAGCAATCATTGGCAGAGCTGATGGTCTCCGAGCAAGGTAAACC CTTAAAAGAAGCCTTGGTTGAAGTGGCTTATGCCGCCAGTTTTATCCAATGGTTTAGTGAGCAGGCCAAGCGGGCTAACG GTGAAATTATCCCGTCAGCCAAAGAGGGCGCACGTATCCTGGCGACCCGCGAACCGATTGGTGTGGTAGCCGCTATCACA CCGTGGAATTTCCCGCTCGCGATGCTCACCCGCAAACTGGGGCCAGCACTGGCCGCCGGTTGTACCGGGCTGATTAAACC TGCCAATAACACGCCATTATCTGCCTTCGCCTTACTGGCACTGGCAGAACAGGCTGGCGTGCCAGCTGGGGTACTCAATG GTGTCGTGGGGGATACTCATGCTATCAGCGACGCGATTATGGCCAGTTCAGACGTGCGTAAAATCTCTTTTACCGGCTCA ACCAATGTCGGTAAGACGCTGATGCGCAATGCTGCTGCAACCATGAAGAGAATTTCGATGGAGCTGGGCGGTAACGCGCC TTACATCGTTTTTGATGATGCCGATTTAGAGGCGGCGGTCGCCGGGGCTATGGCGTGTAAATTCCGTAATGCCGGGCAGG TGTGTGTGTGCGTCAATCGCTTCTATATTCAGGATGCTATCTACGACGAGTTTGTTAACCGCTTGGCTGCCGAGGTGAAA AAACTGAAGGTCGGCAACGGGATGGATAAAGACGTCAACATGGGGCCGTTGATTAATTTGGCTGGTCTGGAGAAAGTAGA AGAGCACGTAAAAGATGCGCTTGAGAAGGGGGGGCGTCTTTTAGCGGGGGGGCATCGCCATGCGCTGGGCGGTAATTTCT TCCAGCCAACGGTGATTGCAGATGCCAATGAGCAGATGAAAGTGGCCTCGGAAGAGACATTTGGCCCGCTGGCCGCCTGC TTCCGTTTCAGCACTGAAGCCGAAGTGATTCAACGGGCCAATAATACGCCATTTGGGCTGGCGGCCTATTTCTATACGCA GAACTTGCAACGGGTGTTCCGCGTTTCAGAGGCGTTGGAAAGCGGTATGATTGGCGTCAATGAATGCTCGGTTTCGACCG AGTTGGCCCCTTTCGGTGGTGTTAAAGAGTCTGGCCTAGGTCGTGAAGGTTCGGTGCTGGGGTTGGATGAATTTATGGAA GTGAAAACCCTGCATTTGGGTAACTTGTAG Protein sequence : MPAQNPLQHQRQHDGIYHIGYFVGGKWSQAQEQFDVCNPATGELVARVAKSGKQETEAAIKAASEAFPAWRKTPAKQRAE ILQRWYLLIMEHQQSLAELMVSEQGKPLKEALVEVAYAASFIQWFSEQAKRANGEIIPSAKEGARILATREPIGVVAAIT PWNFPLAMLTRKLGPALAAGCTGLIKPANNTPLSAFALLALAEQAGVPAGVLNGVVGDTHAISDAIMASSDVRKISFTGS TNVGKTLMRNAAATMKRISMELGGNAPYIVFDDADLEAAVAGAMACKFRNAGQVCVCVNRFYIQDAIYDEFVNRLAAEVK KLKVGNGMDKDVNMGPLINLAGLEKVEEHVKDALEKGGRLLAGGHRHALGGNFFQPTVIADANEQMKVASEETFGPLAAC FRFSTEAEVIQRANNTPFGLAAYFYTQNLQRVFRVSEALESGMIGVNECSVSTELAPFGGVKESGLGREGSVLGLDEFME VKTLHLGNL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 6e-130 | 59 |
