Gene Information

Name : dnaB2 (YpsIP31758_3747)
Accession : YP_001402701.1
Strain : Yersinia pseudotuberculosis IP 31758
Genome accession: NC_009708
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : 3.6.1.-
Position : 4219538 - 4220899 bp
Length : 1362 bp
Strand : -
Note : identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665

DNA sequence :
ATGAGTGACTCAAAGGGCGAGCTGCTCCGTGGGCTTGTTTCAGTGGAAGCAGAACAAAGTGTATTGGGCGGTCTCATGCT
TGATAACGATCGCTGGGATGATATTGCCCTCATTCTCAGTGTTGAGGATTTCTTCAGTAAAGCCCACCAAATCTACTTTC
GTGAGATGAAACGCCTCATTGGCGCTGGGAAACCTATTGATTTACTGACGCTAACTGATTTTTTGAAGCAGCAGGAGCAA
CTGGAGTTGGTTGGTGGTTTCGCCTATGCCGCAGAACTCAGTAAGAACACCCCCAGTGCCGCCAATATTGTGGCTTACAG
TGAAATTGTTGCCCGTTTCAGCCGTGCCCGTCAACTTGTGACCTTAGGCAGTGATATCACTCGTGAGGCCACCGCACCCC
GTGCGGATATTGCTGAAATTATGGAAAAAGCTGAAAAACGGATCATCGATATTGCCGAAAAATCTGAGCCTGAAAAGGCC
GTATCTCTTATTGAGGGGATGGAAAGATTAATTACGCAGCTTGAACTGCGAAATCAGTCGGGCAACGGTATAACCGGTAC
CCCTACTGGGTTTGTTGAGCTTGATGCCAGCACCTGTGGCCTTCAAAACAGTGATTTGATTTTGCTGGCTGGCCGCCCAT
CAATGGGTAAAACGGCGTTAGCCATGTCGATGGTTGTTGGCGCGCTTCAGGGACGAGAAGGCAGTGTGGTGCAGGTGTAT
AGCCTTGAGCAGCCCACCGAACAGTTATTGATGCGCATGATTTCTTCTCTTGGACGTATTGAGCTTCAGCGCCTTAAGAG
TGGTTTGCTGGATGATGAGGATTGGGCTCGCATAAGTCATGCTTCCAGCATTATGGTTGGAGAATGGCGAGACAGATTAA
TTATTGATGATACCGGCAGCCTGACGCCCGCCATGCTGCGAATACGCGCTCGTCGTAATGCGCGCAAGAATGGCCCGCCC
GCGTTGATTATGTTGGATTATTTACAACTGATGCGTTGCCCAAGACAGGAGAACCGTACGCAGGAGATTGCTGAGATTTC
CCGCTCTCTAAAAGCGCTGGCAAAAGAAATGAAATGCCCTGTACTGGCGCTCTCTCAACTTAATCGTTCTCTGGAACAGC
GTGCTGATAAGCGCCCTAATAATGGTGATCTTCGTGACTCTGGCGCACTGGAACAAGATGCTGACGTCATTATGTTTGTC
TATCGCGATGAGGTCTATAACGTCAGTACTGAAGATCAGGGGATCGCTGAAATCATTATCGGCAAGCAGCGCCAGGGGCC
GATTGGTACGGTCAGAGTGAGGTTTGACAGCCGTTACACCCGTTTCGACGATATCAAGAGTTGGGGGCCTGCTGATGAGT
AA

Protein sequence :
MSDSKGELLRGLVSVEAEQSVLGGLMLDNDRWDDIALILSVEDFFSKAHQIYFREMKRLIGAGKPIDLLTLTDFLKQQEQ
LELVGGFAYAAELSKNTPSAANIVAYSEIVARFSRARQLVTLGSDITREATAPRADIAEIMEKAEKRIIDIAEKSEPEKA
VSLIEGMERLITQLELRNQSGNGITGTPTGFVELDASTCGLQNSDLILLAGRPSMGKTALAMSMVVGALQGREGSVVQVY
SLEQPTEQLLMRMISSLGRIELQRLKSGLLDDEDWARISHASSIMVGEWRDRLIIDDTGSLTPAMLRIRARRNARKNGPP
ALIMLDYLQLMRCPRQENRTQEIAEISRSLKALAKEMKCPVLALSQLNRSLEQRADKRPNNGDLRDSGALEQDADVIMFV
YRDEVYNVSTEDQGIAEIIIGKQRQGPIGTVRVRFDSRYTRFDDIKSWGPADE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 0.0 100
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 0.0 99
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 0.0 86
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 2e-113 58
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 7e-119 58
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 7e-119 58
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 4e-105 50
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 2e-92 48
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 3e-93 46