|
Name : YpsIP31758_3692 (YpsIP31758_3692) Accession : YP_001402646.1 Strain : Yersinia pseudotuberculosis IP 31758 Genome accession: NC_009708 Putative virulence/resistance : Unknown Product : RHS/YD repeat-containing protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3209 EC number : - Position : 4163688 - 4167947 bp Length : 4260 bp Strand : + Note : identified by match to protein family HMM PF03527; match to protein family HMM PF05488; match to protein family HMM PF05593; match to protein family HMM TIGR01643 DNA sequence : ATGCTGGAAGCCGCTGCGCGTGTTGGCGATGCCATTGGTCACTCTCAGGCATTAGCCGGTCTTATCGGTGGAACGATTTT AGGCGGGTTAATTAATGTCGCGGGGGGCATTCTTGGCGGAATGCTATTTGCCGCAGGGTGTGCCTCGGCGTGTCTGGGGG TGGGTATCCTGCTGATTGGCGCATCGATTGCCGTGGGTATGGCAGCGAATGCTCTGGGGGAAAAGGCACGGGATGCCTGT GTTGATGCAGGAAAAAACTCGCTCAGCCCCAGCGGGGCCATAGTCACCGGCTCCGCTAATGTTCGCACCAACAGTAAAGC CGCCGCCGTAGCGACCCTCAGTGCCGTCACCTGCGATAAAGATAAAGCACAGCAGGTGGCACAAGGCTCCTCCTCAGTAT TTATCAATGGCTTGCCAGCCGCCCGTCGTAACGATAAAACCACCTGTGATGCCAGTATCATGGTCGGTTCCACGAATGTA TTCATTGGGGGAGGAACGGAAACTACGCTCCCCATTACATCTGAAATTCCTGATTGGGCCTATACCGTTTCAGACCTGAC GATGTTTGCTGCCGGGTTGATCAGTTTTGGCGGCGCAGTCAGTCGGGGGCCAGGGGCGGTACAGAAACTGTTTGCCAAAC TGCCTGGTGCCGACAAAATTGCCAAAATAGCCTGTCGGTTGGCACCACTGGCGATTATTTTACCGGTGGTCGGTATTCTG ACTAACCCGGTGGATGTGACCAGTGGACAGAAGTTCCTTAACGACGAGGATGAGCGAGATTTTACGCTTGATGGTGAATT GCCCCTATTCTGGCAGCGCCGATATCTGAGCAGCTATGTCTATGAGGGGGTATTGGGACGTGGCTGGAATTTGTTTTGGG AAAGTGCGTTGAGTCGTGTAGACGACGGTATATTGTGGCGCAATACCTATGGAGATTATATTCCCTTCCCAGACATACCG GCAGGTCACCAAACCTTCTGTCCCGAACAGCAGTGCTGGTTGATACATCTGGAGGACGGGCGCTGGTGTATCCGCGATGC GGGTGAATGGGTTTACCATTACGGAAAATTTGATGCACAAGGTCTCGCCCCGCTGGCGAATATTACCGATAACGTCGGTA ACCGCCAGTCGTTTCATTACAATGACCAACAGCAGATGGTATCCATTACGGGCACTGGCGGGCTGTCACTGCGCTGTGAC TACCACCCAGAACGGCATCGTCTGACGGCGGTCTGGCAACAGACGCCTGACGGGGACATTATTCGCGCCCGCTATCAGTA TAATGAGTCAGGGCAACTGGCAGCAGTACAACACCGGGATGATACGGTAGTACGCCGTTTTGGCTGGGGTGAAGATCACG GTTTATTGCTCTGGCATGAAAATGTGGCTGGATTGCGTTGTGACTACCAGTGGCAGGAGATTGACGACATCTGGTGTGTG GCAGAACAGCATACCTGCGAGGGTGACGGCTACCGACTGGCCTACGATGAAGAGCGGCACCAACGCACTGCGACCTATCA GGACGGCAGTCAGGCGGTATGGATACTGGATGAACAGCACCGGGTCAGCCGTTACACCGACCGCACTGCCCATGAATGTC AGCTCCAGTGGGACACGGCCGGGCAACCGACGGGTTACCGTTCACCGCGGGGACATCAACGCCAATGTCAGTGGGATGAA CTGGGCCGTCTGGTCAGTGTGACGGATGCCAATGGCGCAGAAACACGTTGGCAGTATGAGCGCAATACTGACCGGCAGAC CTTTGTGTTCTGGCCGGACGGCACGCAAGAGCGCCAGCAGTGGGATGCCCAGGGGCGACTCCTGCAGGAAACTGACCGTC TGGGGCAATCTACGCACTATACCTACCCGCATCCACGTACCTTACTGCCGGACAGCATCACTGACGCGCTGGGAGGGCAA AGTCAGTTGCTCTGGAGTCAGCAAGGTCAACTCACCGGCTACACCGACTGTTCCGGTCAGCCCACGCAGTGGCGCTATGA TGCGCTGGGGCAGTTGCTCTTGCGCCGCGATGCCTTACAACAGGAAATTCGCTACCACTGGGATCCCGTGGGCAGGTTAA CCAAAGTGACCCTGCCAGACGGTTCAACGGAACAGTTTGACTGGTCTCCGGCGGGTCAGTTAGTGCGACACCAGCAAGGC CATAACCAGCCCCGCCATTGGCATTACAGTGTGCGCGGACAAATCCTGAGTACCACAGACCGCCTGAGCCGGGTTATCCG CTATCGCTATGATGCCGAGGGACGCCTGGTCCATCTGGACAATGACAACGGCGGCCAGTATCACTTTAACCGGGATGCGG AAGGTCGTTTGCTGGAAGAACAGCGTCCGGATGATACTCGTTATTCCTACACCTATAATGCCGATGGGCAGGCAACGGAT ATCACACAACGTGGCCTGTCAGAGAACCACGCCTCACCGCCAGAGAAACCTACCCGACTGACGTATGACGCCGTTGGCCG ACTGATAGCGCGCCATACTCTCACGGAACAGACGTGCTATCAGTGGGACAAGATGGGCAATCTACTCAGTGCCATCCGCA CCCCGACCGAACAGGGTGAAAAGCTGGGTATTCTGACCAATACCGTGACCTTTGAACGGGATGCGTTGGGCCGCATTACT CAGGAGCATAATGGGGCGGAGGCGCTGGCTTACCACTATGATGCGCTGGGCAACCTGACCCGACTGGAATTACCGAATGA TGACCATTTCCAGTGGCTGCATTATGGCTCTGGGCATGTGAGTGCCATCCGCTTTAATGACCAGTTGGTCAGCGAATTCG AGCGTGATGCATTACACCGCGAGACCCGCCGCACACAAGGTATCCTGACGCAACAACGTCAGTATGATGTACTGGGTCGC CGCCGCTGGCAAAGTAGTATCAGCAGTCGTCTCACCGAGGCGCTCACCACGCCAGAGCAGGGAATACTGTGGCGGGCCTA TCATTACGATGAACTGCATGAACTGGCTGCGGTAGAGGACAGCAACCGGGGCATGTTGAGCTACGGCTATGATGAAGAGG GACGACTACGCAGTACCGTCTCGCCACACAGCGGTCAGACGACGGTGCATTATGACCGGGCCGATAACGCGTTGATGTTA CCGTTACAGACGCCGGAGAGTTCGCCATATGCGCGGAGCAGTCAACCTTATTGTGATAATCGGCTGACACGTTGGGAACA GTGGCAGTATCACTATGATGCCTTTGGTAACCTGTCGGAGCGACTGGAAGGCTACCGTACTCAACGCTACCGCTATGATG GGGATAACCGGTTGGTCGGGGCCAAAGGGGATGGGCAGAAAGGTCTCTTTGAGGCGCAATATCATTATGATGCGCTGGGT CGGCGGCTCAGCAAAGTGGTCAGGACGCCACAGGGTAACCAAGAGACTCACTTTTTATGGCAGGGTCTGCGTCTGCTGCA AAGCCGCACGGACGAGAGCCAGCAAACCTACTGCTATGACCCGAATGAGGCATACACACCACTCGCCTGCATTGAGCGGC GCTACGGTGAAGACACCTTGTACTGGTATCACACTGATCTGAATGGCTCGCCACAGGAAGTGACCAACGCGCAGGGTGAA ATGGTATGGTCGGGGCAATATGGGGTGTTTGGGCAAGTTACACGCCAGACCGATGCGATGTGGCGTAACGTCAGTAAACC GCTGGGCCAATTCAGGCAGCCATTGCGTTATGCCGGGCAATATCTGGATGACGAAACGGGGTTGCACTACACTACCTACC GGTATTACGCGCCGGAGGTGGGAAGGTTTATCACACCCGATCCGATTGGCTTGGCGGGGGGTCTAAATCTTTATCAGTAT GCGCCAAATCCGTTGGGGTGGATTGATCCATGGGGGTTGGCAGGTAGTCCAACGACAGCAACACACATCACTTATCAGGG TATTGATGCTATTACAGGTAAGCCTTATGTTGGGTATGCAAGTATGCAAGGCAATCAAATAGCACAAGATGTGTTGAAAT ATCGCTATGCTAATGACTTTAGTCGTTTTGGTGGAACTCCTCCTGAAATTTTATACGATGGGTATGGTCAGGCAGGTAAA TATGTCACTCGTGGATTAGAGCAGCGGACATTTGAAAATCTTGGTGGACTTGACGGTACTGCGAATAAACAAAATCCAGT AGGGCAGGGAAATGCTAGAAGAACAGAATACCTTAATGCGGCAGATGAACATCTGAGTAATAAAAATGGTAGTAGAAAAG GAGGAGGCGGTCGATGTTAA Protein sequence : MLEAAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIGASIAVGMAANALGEKARDAC VDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKDKAQQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNV FIGGGTETTLPITSEIPDWAYTVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGIL TNPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRVDDGILWRNTYGDYIPFPDIP AGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQGLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCD YHPERHRLTAVWQQTPDGDIIRARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDIWCV AEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQWDTAGQPTGYRSPRGHQRQCQWDE LGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQERQQWDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQ SQLLWSQQGQLTGYTDCSGQPTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRHQQG HNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRLLEEQRPDDTRYSYTYNADGQATD ITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTEQTCYQWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRIT QEHNGAEALAYHYDALGNLTRLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDVLGR RRWQSSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRLRSTVSPHSGQTTVHYDRADNALML PLQTPESSPYARSSQPYCDNRLTRWEQWQYHYDAFGNLSERLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALG RRLSKVVRTPQGNQETHFLWQGLRLLQSRTDESQQTYCYDPNEAYTPLACIERRYGEDTLYWYHTDLNGSPQEVTNAQGE MVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYTTYRYYAPEVGRFITPDPIGLAGGLNLYQY APNPLGWIDPWGLAGSPTTATHITYQGIDAITGKPYVGYASMQGNQIAQDVLKYRYANDFSRFGGTPPEILYDGYGQAGK YVTRGLEQRTFENLGGLDGTANKQNPVGQGNARRTEYLNAADEHLSNKNGSRKGGGGRC |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| YpsIP31758_3692 | YP_001402646.1 | RHS/YD repeat-containing protein | Not tested | YAPI | Protein | 0.0 | 100 |
| api89 | CAF28563.1 | putative membrane-bound sugar-binding protein | Not tested | YAPI | Protein | 0.0 | 98 |
