Gene Information

Name : YpsIP31758_3540 (YpsIP31758_3540)
Accession : YP_001402494.1
Strain : Yersinia pseudotuberculosis IP 31758
Genome accession: NC_009708
Putative virulence/resistance : Unknown
Product : phage integrase family site specific recombinase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 3999144 - 4000379 bp
Length : 1236 bp
Strand : -
Note : identified by match to protein family HMM PF00589

DNA sequence : 
ATGGCTTTGAGTGATGTGAAGGTTCGTTCGGCCAAGCCTGAAGAAAAAGCCTATAAGCTTACCGATGGTGACGGTATGGT
GTTACTGGTTCATCCTAACGGCTCAAAGTACTGGCGGCTGCGATATCGCTTTGGCGGCAAAGAAAAGATGTTGGCGCTGG
GAATATATCCTGAAATATCGTTGGCAGATGCCAGAGCACGGCGTGACGAAGCTCGTAAGCAGTTAGCTAACGGTGTGGAC
CCAAGTGAGAGCAAGAAAGCCGTTAAGGTAGAGCAGGAGCAAGAAGCGATAACTTTTGAAGTGGTAGCCAGAGAGTGGCA
TGCCAGTAATCGTCAATGGTCAGAAGCTCACAGTGCTCGAGTGCTCAAAAGCTTAGAGGACAATCTCTTTCAATCCATAG
GCAAACGGAATATCACAGACCTCGGAACCCGTGATCTTTTACCTCCCATTAAGGCCGTAGAGATGTCTGGGCGTCTTGAG
GTGGCTTCCCGCCTGCAACAACGAACCACAGCGATAATGCGCTATGCCGTTCAAAGCGGTTTAATTGATTACAACCCCGC
GCAGGAGATGGCGGGCGCTGTTGCTACCGGTAAAAGAAAGCACCGTGCTGCACTTGAGTTAAACCGTGTTTCAGAGTTAC
TTCACCGTATTGACTACTACAGTGGCAGGCCACTCACTCGGCTAGCGGTAGAATTGACTTTATTGGTCTTTATCCGTTCC
AGTGAATTACGCTTTGCCCGTTGGTCAGAAGTAGATTTTGAAACCGCCATGTGGACCATCCCTGGAGAGCGTGAACCACT
GGAAGGTGTTAAACACTCGCATCGGGGCTCAAAAATGCGCACTCCCCATCTTGTCCCCTTATCCCGCCAGGCGCTCGCCA
TTCTGGAAAAGATCAAAAGCATGAGTGGAAATCGTGAGCTGATTTTTATCGGTGATCACGACCCACGTAAGCCCATGAGT
GAGAACACGGTGAACAAAGCCCTACGTGTTATGGGCTACGATACTAAAGTAGATGTCTGTGGGCACGGTTTTAGAACTAT
GGCCTGTAGTTCATTGATTGAGTCGGGATTGTGGTCTAGGGATGCAGTAGAAAGGCAGATGAGTCACCAGGAGCGCAACT
CTGTACGTGCGGCTTATATTCATAAAGCCGAGCACTTAGATGAGCGTAAACTGATGATTCAGTGGTGGGCGGATTTTTTT
GGAGGCAAACAGGCAGCAAGCTATTTCACCTTTTGA

Protein sequence : 
MALSDVKVRSAKPEEKAYKLTDGDGMVLLVHPNGSKYWRLRYRFGGKEKMLALGIYPEISLADARARRDEARKQLANGVD
PSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSARVLKSLEDNLFQSIGKRNITDLGTRDLLPPIKAVEMSGRLE
VASRLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS
SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALAILEKIKSMSGNRELIFIGDHDPRKPMS
ENTVNKALRVMGYDTKVDVCGHGFRTMACSSLIESGLWSRDAVERQMSHQERNSVRAAYIHKAEHLDERKLMIQWWADFF
GGKQAASYFTF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 3e-142 77
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 6e-139 69
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 1e-137 69
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 3e-139 69
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 1e-137 69
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-138 69
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 2e-138 69
int AAL51028.1 CP4-like integrase Not tested LEE Protein 2e-138 69
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 1e-137 69
int-phe AAL60261.1 Int-phe Not tested LEE Protein 2e-138 69
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 1e-137 69
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 3e-138 69
int AAL51003.1 CP4-like integrase Not tested LEE Protein 7e-138 69
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 3e-138 69
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 3e-138 69
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-138 69
int CAC81896.1 integrase Not tested LEE II Protein 2e-128 69
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 7e-139 68
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 7e-139 68
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 8e-139 68
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 1e-138 68
int AAK00456.1 Int Not tested SHI-1 Protein 5e-129 68
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 8e-123 63
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 8e-123 63
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 4e-82 58
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 2e-111 58
int CAA08754.1 integrase Not tested HPI Protein 2e-105 57
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 2e-90 57
int CAA21384.1 - Not tested HPI Protein 7e-105 56
int YP_002346908.1 integrase Not tested HPI Protein 7e-105 56
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 7e-105 56
int2 NP_993013.1 integrase Not tested HPI Protein 7e-105 56
int CAB59974.1 integrase Not tested HPI Protein 5e-106 56
unnamed AAD17660.1 unknown Not tested HPI Protein 3e-102 55
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 7e-104 54
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 7e-104 54
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 2e-99 53
int AAD44730.1 Int Not tested SHI-2 Protein 3e-79 43
int CAC39282.1 integrase Not tested LPA Protein 6e-80 43
aec33 AAW51716.1 Int Not tested AGI-3 Protein 4e-80 43
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 2e-70 42
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 2e-78 42
ECs4534 NP_312561.1 integrase Not tested LEE Protein 2e-78 42
int AAC31482.1 CP4-like integrase Not tested LEE Protein 1e-78 42
int ACU09430.1 integrase Not tested LEE Protein 1e-78 42
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 8e-70 42
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 5e-78 42
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 7e-78 42
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 7e-78 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YpsIP31758_3540 YP_001402494.1 phage integrase family site specific recombinase VFG1536 Protein 2e-142 77
YpsIP31758_3540 YP_001402494.1 phage integrase family site specific recombinase VFG1693 Protein 1e-139 69
YpsIP31758_3540 YP_001402494.1 phage integrase family site specific recombinase VFG0626 Protein 3e-139 68
YpsIP31758_3540 YP_001402494.1 phage integrase family site specific recombinase VFG0783 Protein 7e-79 42
YpsIP31758_3540 YP_001402494.1 phage integrase family site specific recombinase VFG0598 Protein 3e-78 42