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Name : YpsIP31758_0333 (YpsIP31758_0333) Accession : YP_001399327.1 Strain : Yersinia pseudotuberculosis IP 31758 Genome accession: NC_009708 Putative virulence/resistance : Unknown Product : RHS/YD repeat-containing protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3209 EC number : - Position : 391335 - 395591 bp Length : 4257 bp Strand : + Note : identified by match to protein family HMM PF03527; match to protein family HMM PF05488; match to protein family HMM PF05593; match to protein family HMM TIGR01643 DNA sequence : ATGTTTGAAGCGGCCCGTGTTGATGACAAGCTTTATCATTCCAGTGCCTTAGCGGGTTTTATTATTGGCTCCATTATTGG TGCCGCCGTGATTTTTGCGGCCGCGGCTTACGCCGCCTCCATTGTTCTCACCGGCGGGGCGACGCTGGTCGCTACCGGCT TTATTGTGGGTATGGGGGTGACCACGCTGGGCGTCGTTGCCGGTGGGTTAATACGCTCCGTGGGCGAAAAAATAGGGAGC ATGTGCCATCACGATGTCGGACAAATTACGACAGGGTCCAAAAACGTTAAAGTGAACAGTAAACGGGCGGCGCATGTCGA GCTCAGTACCGTGGCCTGTAAAGATGACTCCGCCATTCAGCGCATGGCCGAAGGTTCGTCAAATATCTTTATTAACAGTA AAGCCGCCGTTCGTCTGGAAGATAAAACGACCTGTGATGCGGTTGTCGATTCCGCTTCCAGCAATGTGACGTTTGGTGGG GGGCGCGTTCAGTATCTCGATATTAAACGCGAGATTTCTGATGAAATGCGTGATTTGTCAGAGAAGCTGTTTATTGTCGC CGGGCTGGCGGGCGGCATATTTGGGGCGGCAAAACAGGCGGGGTGTTTCGGCCTTAAATGCCTGAGCAAGATTGCGTTGG GTGAGATGGCCGGGGCGGCTGCCGGGTATGGGCTGGAAAAAGGGGTTGGGGCCATCGCCGGTTATTTCGGTTACCCGGTT GATGTGATCAGTGGACAGAAATTGCTGACAGGTGAGGGCGATGATACCGATTTTATTCTGCCGGGTATCTTCCCGCTGCA CTGGAGCCGGATTTATCGCAGTGAAAATCACCATGTCGGGGCGCTGGGACAAGGCTGGTCTCTGGTATGGGAGCGTTCAT TACGCAAAGAAGATGACAGCATTGTTTATCAGAATGATGAAGGTCGGGAGATTGTCTTTCCCCTGATTAAACGTGGAGAG CGCTATTTCTCCCCCACGGAGCATATCTGGCTGGCACGTACCGAGCGTGATACCTATGCCATCAGCAGCCCGTTTGAAAC CTGTTTTATTTTTGAGGCCTTTTCTGAGGCTGGCGTTGCGAAATTAGCCAGCCTCGAAGATCTCAATGGTCATGCCCTGT ATTTCTCTTATGACGATATCGGGCAACTGAAAAAAATATCGACCACCAGCGGTTATGGGGTGTATTGCCAGTATGAAAAA GGGCGTCTGGTGTCCGTTGCCTGCGTCAAGGGCGGTACGCCGGGCACACTGGTCCGCTACCAGTATAATGAACAGCACCA GTTGGTCAGCGTCACTAACCGTGAGGGGCAAATCACCCGCCAGTTTGGTTACCATGGCCATCTGATCAATAAACTGGCGG ATGTCAGGGGGCTGGAGTGCCGTTACACATGGGCTGATATCGGCGGAACCCCGCGAATTACGCACAGTGCCACCAATCTG GGGGAGCAGTGGCAGTTTGATTATGATATCGACAATCAACAGACCACCCTGACGGACCTCAATACCGGGCAGACCGCCTG CTGGGGATATAACGCCCAACATTTAATTACCGACTATCGGGATTTTGATGGCGGGAAATATGCATTTGACTACAACGACC TCAATATGCCGGTACGCGTTGTGCTGGCAGGCGAGAGAACGCTCGTTCTGGCTTACGATGCACTGGCGCGCCCGATCCAG ATCACCGATCCGCTAAAACGTGAAATCCACATTGATTATCACCGTAACAGTCTGCGGGTGATGCGCCGTCAGTACCCTGA CGGGCAGGTCTGGAAGGGGGAATATGACCGAACCGGCCGTTTGCTGAAAGAGAACGCGCCGGATGGCGGGGTGACGCGTT ATCATTATCCGGGGGCCTCATCCCTTCCTGAACGCATAACCAATGCCGTAGGGGCGCAGACACACTTTGGCTGGGAAAGG CACGGGCAACTGACGGAGCACACCGACTGTTCGGGTAAACTGACCCGCTACGAATATGATATCGATGGCCATCTGCTGAC GGTCATCGATGCTGAAAACCATGCAACACATTACAGCTACAACCGTCTCGGGCAGCTCACCGGGGTCAGGTACGCCGATG GCCGCAAAGAGCAGTTGCGGTATAACGCTCAGGGACTGGTTGAACAGTTTACCGATCCTGTCGGGCGGCAGTTGCACTGG CGTTATAACCTGCGGGGTCAGCCGGTCAGCTTTACTGATCGTCTGCAACGGCAATACCGTTACCGCTATGACTGCCATGG GCAGATGATTGAGCTGGATAATGCCAATGGTGGCCAGTATCACTTCCGGTGGAGCAGCGGCGGGCAATTGGTGGAAGAGC AGTATCCCGATAACCTTGTCCGGCGTTATCGCTATGGGGAGAGCGGGATGCTGATGGCGCTGGAGACCACCGCGCCCACG GTTGACGATCTTACCGTCTCCCGGCAGGTCAGTTTTGACTATGATGCGGGCGGGCGAATGACGCAGCGCCTGACGGGCAT GAGTGCGACCCGGTATGACTGGGACATTATGGACCGTTTATTGCTGGCCGAGCGTGTGCCAACGGCGGTGGGCGAACAGG CGGGGATCGTCGGTCATGGTGTTCGTTTGGCGTATGACAAGGCCGGGCATTTACTGACGGAAAGCGGTGACCTGGGTGCG GTGACGTATCAGTGGGATCCGCTGCATCACCTGGCCGCCCTGACGCTGCCCGATGGGCAGACGCTGTCATGGTTGCGTTA CGGTGCGGGCCATGTCAGTGCCATTCGTCATGGTGATACGCTTATTTCCGAGTTCAGCCGGGATAATCTTCATCGGGAAG TGAGCCGGACCCAGGGTATTTTGACGCAGTATCGTGATTATGACGCGATGGGGCGGCGGTTGTGGCAATCGGCGGGTTCT GATGCGCCGACAGTGGCGGCCGATCTGCTGCCCCGTCAGGGGGATATCTGGCGTAAATTTAGCTTTGACACTGCCGGTGA ACTGAGCATGGCCACCGATTTTATCCGGGGTGAGCAGCAGTACCGTTATGATGCGGAAGGGCGGCTGACTGACAGCCGGG AGCGTCATCAGTTATCCGTTGCGGAGGATTTTGCTTACGACAATGCGGATAACCTGCTGAACCTGAGGAAACTGCCGTTT GACACCGTCGATCCACTGTACGATACACCGGTCGCCAACAACCGTTTGACGCAATGGCAGCATTACCGTTTTGAGTATGA TGCCTGGGGAAACATGACCACGCGGCATGCCGGTGGTCGGATGCAACATTTTGCCTATGACGATGATAACCGGCTGCTGC GGGCCTGGGGAACCGGGCCGTTAGGGGAGCATGACAGCCACTATCGGTATGATGCGCTGGGGCGGCGTATCCACAAATCG GTGACGATAAAGCGCGGCGCAGAAAAAACCACCCGTCAGACCGATTTTATCTGGCAGGGGTTGCGGTTATTGCAGGAGCA ACATGCGGACGGTAACGCGACCTATATTTACGACCCGAACGAAAGTTATACGCCGCTGGCGCGGGTCGATCAGCGTCATG GCGAGACAGAAAGTCAGGTGTATTATTTTCATACGGATATCAACGGTACCCCGCTGGATGTCACGGACGGAGAGGGTAAG CACCGTTGGTCAGGGAAATACCACGCCTGGGGCAAAGTTACCCGGCAGAATGTCAGCGATCCAAGGCAAAGCACGGTCAG CCGGTTCGCGCAGCCGCTGCGTTATCCGGGGCAATACAGTGATGACGAGACGGGTTTGCACTACAATACGTTCAGGTACT ATGACCCGGAGATAGGGCGATTTAGTACGCAGGACCCGATAGGGCTGGCGGGGGGGATAAATCTTTATCAGTATGGGCCA AATCCGCTAGGTTGGGTGGATCCTTTAGGATGGATGCCTTGGGCGTGGAATCCAAATGGTATGGGGCATCACCTTATTCC TCGGAATAAAGCTAATAGCATTGGACTTACTGAGCTAGGAACGAAATTAAATACGCCTACTTTCTTCCCAGACCCTTATC AGGCTGGTATGCATGAGGAACTGCATAGAGCAATTAAAAACGATATAGGGAAAATTCAAGGTCCTTGGAAAGGTTCTGCA GCCGATTTATTTGAAGCTACTGGTAGAAATTTAGATTCCGTCTCTCATATTCGAGGGGATTTACGTATTCCTTCAACTGG AGAAGTTATTGCTAGAAATGTCACTCCTAAAGAAGCTCATTCAAGATTAACTGAATGGTTTAATAATAAAAAGTCAGGTG GTGGAGGTGGTTGTTAA Protein sequence : MFEAARVDDKLYHSSALAGFIIGSIIGAAVIFAAAAYAASIVLTGGATLVATGFIVGMGVTTLGVVAGGLIRSVGEKIGS MCHHDVGQITTGSKNVKVNSKRAAHVELSTVACKDDSAIQRMAEGSSNIFINSKAAVRLEDKTTCDAVVDSASSNVTFGG GRVQYLDIKREISDEMRDLSEKLFIVAGLAGGIFGAAKQAGCFGLKCLSKIALGEMAGAAAGYGLEKGVGAIAGYFGYPV DVISGQKLLTGEGDDTDFILPGIFPLHWSRIYRSENHHVGALGQGWSLVWERSLRKEDDSIVYQNDEGREIVFPLIKRGE RYFSPTEHIWLARTERDTYAISSPFETCFIFEAFSEAGVAKLASLEDLNGHALYFSYDDIGQLKKISTTSGYGVYCQYEK GRLVSVACVKGGTPGTLVRYQYNEQHQLVSVTNREGQITRQFGYHGHLINKLADVRGLECRYTWADIGGTPRITHSATNL GEQWQFDYDIDNQQTTLTDLNTGQTACWGYNAQHLITDYRDFDGGKYAFDYNDLNMPVRVVLAGERTLVLAYDALARPIQ ITDPLKREIHIDYHRNSLRVMRRQYPDGQVWKGEYDRTGRLLKENAPDGGVTRYHYPGASSLPERITNAVGAQTHFGWER HGQLTEHTDCSGKLTRYEYDIDGHLLTVIDAENHATHYSYNRLGQLTGVRYADGRKEQLRYNAQGLVEQFTDPVGRQLHW RYNLRGQPVSFTDRLQRQYRYRYDCHGQMIELDNANGGQYHFRWSSGGQLVEEQYPDNLVRRYRYGESGMLMALETTAPT VDDLTVSRQVSFDYDAGGRMTQRLTGMSATRYDWDIMDRLLLAERVPTAVGEQAGIVGHGVRLAYDKAGHLLTESGDLGA VTYQWDPLHHLAALTLPDGQTLSWLRYGAGHVSAIRHGDTLISEFSRDNLHREVSRTQGILTQYRDYDAMGRRLWQSAGS DAPTVAADLLPRQGDIWRKFSFDTAGELSMATDFIRGEQQYRYDAEGRLTDSRERHQLSVAEDFAYDNADNLLNLRKLPF DTVDPLYDTPVANNRLTQWQHYRFEYDAWGNMTTRHAGGRMQHFAYDDDNRLLRAWGTGPLGEHDSHYRYDALGRRIHKS VTIKRGAEKTTRQTDFIWQGLRLLQEQHADGNATYIYDPNESYTPLARVDQRHGETESQVYYFHTDINGTPLDVTDGEGK HRWSGKYHAWGKVTRQNVSDPRQSTVSRFAQPLRYPGQYSDDETGLHYNTFRYYDPEIGRFSTQDPIGLAGGINLYQYGP NPLGWVDPLGWMPWAWNPNGMGHHLIPRNKANSIGLTELGTKLNTPTFFPDPYQAGMHEELHRAIKNDIGKIQGPWKGSA ADLFEATGRNLDSVSHIRGDLRIPSTGEVIARNVTPKEAHSRLTEWFNNKKSGGGGGC |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| YpsIP31758_3692 | YP_001402646.1 | RHS/YD repeat-containing protein | Not tested | YAPI | Protein | 0.0 | 41 |
| api89 | CAF28563.1 | putative membrane-bound sugar-binding protein | Not tested | YAPI | Protein | 0.0 | 41 |
