|
Name : YpsIP31758_0330 (YpsIP31758_0330) Accession : YP_001399324.1 Strain : Yersinia pseudotuberculosis IP 31758 Genome accession: NC_009708 Putative virulence/resistance : Unknown Product : RHS/YD repeat-containing protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3209 EC number : - Position : 385627 - 389835 bp Length : 4209 bp Strand : + Note : identified by match to protein family HMM PF03527; match to protein family HMM PF05488; match to protein family HMM PF05593; match to protein family HMM TIGR01643 DNA sequence : ATGTTTGAAGCGGCCCGTGTTGATGACAAGCTTTATCATTCCAGTGCCTTAGCGGGTTTTATTATTGGCTCCATTATTGG TGCCGCCGTGATTTTTGCGGCCGCGGCTTACGCCGCCTCCATTGTTCTCACCGGCGGGGCGACGCTGGTCGCTACCGGCT TTATTGTGGGTATGGGGGTGACCACGCTGGGCGTCGTTGCCGGTGGGTTAATACGCTCCGTGGGCGAAAAAATAGGGAGC ATGTGCCATCACGATGTCGGACAAATTACGACAGGGTCCAAAAACGTTAAAGTGAACAGTAAACGGGCGGCGCATGTCGA GCTCAGTACCGTGGCCTGTAAAGATGACTCCGCCATTCAGCGCATGGCCGAAGGTTCGTCAAATATCTTTATTAACAGTA AAGCCGCCGTTCGTCTGGAAGATAAAACGACCTGTGATGCGGTTGTCGATTCCGCTTCCAGTAATGTGACGTTTGGTGGG GGGCGCGTTCAGTATCTCGATATTAAACGCGAGATTTCTGATGAAATGCGTGATTTGTCAGAGAAGCTGTTTATTGTCGC CGGGCTGGCGGGCGGCATATTTGGGGCGGCAAAACAGGCGGGGTGTTTCGGCCTTAAATGCCTGAGCAAGATTGCGTTGG GTGAGATGGCCGGGGCGGCTGCCGGGTATGGGCTGGAAAAAGGGGTTGGGGCCATCGCCGGTTATTTCGGTTACCCGGTT GATGTGATCAGTGGACAGAAATTGCTGACAGGTGAGGGCGATGATACCGATTTTATTCTGCCGGGTATCTTCCCGCTGCA CTGGAGCCGGATTTATCGCAGTGAAAATCACCATGTCGGGGCGCTGGGACAAGGCTGGTCTCTGGTATGGGAGCGTTCAT TACGCAAAGAAGATGACAGCATTGTTTATCAGAATGATGAAGGTCGGGAGATTGTCTTTCCCCTGATTAAACGTGGAGAG CGCTATTTCTCCCCCACGGAGCATATCTGGCTGGCACGTACCGAGCGTGATACCTATGCCATCAGCAGCCCGTTTGAAAC CTGTTTTATTTTTGAGGCCTTTTCTGAGGCTGGCGTCGCGAAATTAGCCAGCCTCGAAGATATCAATGGTCATGCCCTGT ATTTCTTTTATGACGATATCGGGCAACTGAAAAAAATATCGACCACCAGCGGCTATGGGGTGTATTGCCAGTATGAAAAA GGGCGTCTGGTGTCCGTTGCCTGTGTTAAGGGCGGTACGCCGGGCACACTGGTCCGCTACCAGTATAATGAACAGCACCA GTTGGTTAGCGTCACTAACCGTGAGGGGCAAATCACCCGCCAGTTTGGTTACCATGGCCATCTGATCAATAAACTGGCGG ATGTCAGGGGGCTGGAGTGCCGTTACACATGGGCTGATATCGGCGGAACCCCGCGAATTACGCACAGTGCCACCAATCTG GGGGAGCAGTGGCAGTTTGATTATGATATCGACAATCAACAGACCACCCTGACGGACCTCAATACCGGGCAGACCGCCTG CTGGGGATATAACGCCCAACATTTAATTACCGACTATCGGGATTTTGATGGCGGGAAATATGCATTTGACTACAACGACC TCAATATGCCGGTACGCGTTGTGCTGGCAGGCGAGAGAACGCTCGTTCTGGTTTACGATGCACTGGCGCGCCCGATCCAG ATCACCGATCCGCTAAAACGTGAAACCCACATTGATTATCACCGTAACAGTCTGCGGGTGGTGCGCCGTCAGTACCCTGA CGGGCAGGTCTGGAAGGGGGAATATGACCGTACCGGCCGTTTGCTGAAAGAGAACGCGCCGGATGGCGGGGTGACGCTTT ATCATTATCCAGGGGCCTCATCCCTTCCTGAACGCATAACCAATGCCGTAGGGGCGCAGACACACCTTGGTTGGGAAAGG CACGGGCAACTGACGGAGCACACCGACTGCTCGGGTAAACTGACCCGCTACGAATATGATATCGATGGCCATCTGCTGAC GGTCATCGATGCTGAAAACCATTCAACACATTACAGCTACAACCGTCTCGGGCAGCCCACCGGGGTCAGGTACGCCGATG GCCGCAAAGAGCAGTTGCGGTATAACGCTCAGGGGCTGGTTGAACAGTTTACCGATCCTGTCGGGCGGCAGTTGCACTGG CGTTATAACCTGCGGGGTCAGCCGGTCAGCTTTACTGATCGTCTGCAACGGGAATACCGTTACCGCTATGACTGCCATGG GCAGATGATTGAGCTGGATAATGCCAATGGGGGCCAGTATCACTTCCGGTGGAGCAGCGGCGGGCAATTGGTGGAAGAGC AGTATCCCGATAACCTTGTCCGGCGTTATCGCTATGGGGAGAGCGGGATGCTGATGGCGCTGGAGACCACCGCGCCCACG GTTGACGATCTTACCGTCTCCCGGCAGGTCAGTTTTGACTATGATGCGGGCGGGCGAATGACGCAGCGCCTGACGGGCAT GAGTGCGACCCGGTATGACTGGGACATCATGGACCGTTTATTGCTGGCCGAGCGTGTGCCAACGGCGGTGGGCGAACAGG CGGGGATCGTCGGTAATGGTGTTCGTTTGGCGTATGACAAGGCCGGGCATTTACTGACGGAAAGCGGTGACCTGGGTGCG GTGACGTATCAGTGGGATCCGCTGCATCATCTGGCCGCCCTGACGCTGCCCGATGGTCAGACGCTGTCATGGTTGCGTTA CGGTGCGGGCCATGTCAGTGCCATTCGTCATGGTGATACGCTTATTTCCGAGTTCAGCCGGGATAATCTTCATCGGGAAG TGAGCCGGACCCAGGGTATTTTGACGCAGTATCGTGATTATGACGCGATGGGGCGGCGGTTGTGGCAATCGGCGGGTTCT GATGCGCCGACAGTGGCGGCCGATCTGCTGCCCCGTCAGGGGGATATCTGGCGTAAATTTAGCTTTGACACTGCCGGTGA ACTGAGCATGGCCACCGATTTTATCCGGGGTGAGCAGCAGTACCGTTATGATGCGGAAGGGCGGCTGACTGACAGCCGGG AGCGTCATCAGTTATCCGTTGCGGAGGATTTTGCTTACGACAATGCGGATAACCTGCTGAACCTGAGGAAACTGCCGTTT GACACCGTCGATCCACTGTACGATACACCGGTCGCCAACAACCGTTTGACGCAATGGCAGCATTACCGTTTTGAGTATGA TGCCTGGGGAAACATGACCACGCGGCATGCCGGTGGTCGGATGCAACATTTTGCCTATGACGATGATAACCGGCTGCTGC GGGCCTGGGGAACCGGGCCGTTAGGGGAGCATGACAGCCACTATCGGTATGATGCGCTGGGGCGGCGTATCCACAAATCG GTGACGATAAAGCGCGGCGCAGAAAAAACCACCCGTCAGACCGATTTTATCTGGCAGGGACTGCGGTTATTGCAGGAGCA ACATGCGGACGGCAACGCGACCTATATTTACGACCCGAACGAAAGTTATACGCCGCTGGCGCGGGTCGATCAGCGTCATG GCGAGACAGAAAGTCAGGTGTATTATTTTCATACGGATATCAACGGTACCCCGCTGGATGTCACGGACGGAGAGGGTAAG CACCGCTGGTCAGGGAAATACCACGCCTGGGGCAAAGTTACCCGGCAGAATGTCAGCGATCCAAGGCAAAGCACGGTCAG CCGGTTCGCGCAGCCGCTGCGTTATCCGGGGCAATACAGTGATGACGAGACGGGTTTGCACTACAATACGTTCAGGTACT ATGACCCGGAGATAGGGCGATTTAGTACGCAGGACCCGATAGGGCTGGCGGGGGGGGTGAATCTTTATCAGTATGGGCCA AATCCGTTAACGTGGATCGATCCTTGGGGTTATACAGGAACATATATTTTTACTGACGGTGTTGTATCTTATATAGGTAA GGGCCCGTTAGGACGAATGGTAGCGTCTATGGGACAAAGAATTGGCGGTTCTTTGAATGCAATACAGTCGGCTCATTTGG ACTTTGGTAGTGATAAGTTAGGATTCATGGTAGAACATCGGATGATGGAAAAGTATGGTGCTCGTTATTCTCCCGACTTT GCTAACAGTGAACGCGTTGGTTCACCGGGAAAAAAATTATATGATGCCGCCGATTTGAAAACACAAAAAAAGGTTGACCG TCTAGCTAATAAATTAGATAAGAATTTTAAGTCATCTAAAGGATGTTAA Protein sequence : MFEAARVDDKLYHSSALAGFIIGSIIGAAVIFAAAAYAASIVLTGGATLVATGFIVGMGVTTLGVVAGGLIRSVGEKIGS MCHHDVGQITTGSKNVKVNSKRAAHVELSTVACKDDSAIQRMAEGSSNIFINSKAAVRLEDKTTCDAVVDSASSNVTFGG GRVQYLDIKREISDEMRDLSEKLFIVAGLAGGIFGAAKQAGCFGLKCLSKIALGEMAGAAAGYGLEKGVGAIAGYFGYPV DVISGQKLLTGEGDDTDFILPGIFPLHWSRIYRSENHHVGALGQGWSLVWERSLRKEDDSIVYQNDEGREIVFPLIKRGE RYFSPTEHIWLARTERDTYAISSPFETCFIFEAFSEAGVAKLASLEDINGHALYFFYDDIGQLKKISTTSGYGVYCQYEK GRLVSVACVKGGTPGTLVRYQYNEQHQLVSVTNREGQITRQFGYHGHLINKLADVRGLECRYTWADIGGTPRITHSATNL GEQWQFDYDIDNQQTTLTDLNTGQTACWGYNAQHLITDYRDFDGGKYAFDYNDLNMPVRVVLAGERTLVLVYDALARPIQ ITDPLKRETHIDYHRNSLRVVRRQYPDGQVWKGEYDRTGRLLKENAPDGGVTLYHYPGASSLPERITNAVGAQTHLGWER HGQLTEHTDCSGKLTRYEYDIDGHLLTVIDAENHSTHYSYNRLGQPTGVRYADGRKEQLRYNAQGLVEQFTDPVGRQLHW RYNLRGQPVSFTDRLQREYRYRYDCHGQMIELDNANGGQYHFRWSSGGQLVEEQYPDNLVRRYRYGESGMLMALETTAPT VDDLTVSRQVSFDYDAGGRMTQRLTGMSATRYDWDIMDRLLLAERVPTAVGEQAGIVGNGVRLAYDKAGHLLTESGDLGA VTYQWDPLHHLAALTLPDGQTLSWLRYGAGHVSAIRHGDTLISEFSRDNLHREVSRTQGILTQYRDYDAMGRRLWQSAGS DAPTVAADLLPRQGDIWRKFSFDTAGELSMATDFIRGEQQYRYDAEGRLTDSRERHQLSVAEDFAYDNADNLLNLRKLPF DTVDPLYDTPVANNRLTQWQHYRFEYDAWGNMTTRHAGGRMQHFAYDDDNRLLRAWGTGPLGEHDSHYRYDALGRRIHKS VTIKRGAEKTTRQTDFIWQGLRLLQEQHADGNATYIYDPNESYTPLARVDQRHGETESQVYYFHTDINGTPLDVTDGEGK HRWSGKYHAWGKVTRQNVSDPRQSTVSRFAQPLRYPGQYSDDETGLHYNTFRYYDPEIGRFSTQDPIGLAGGVNLYQYGP NPLTWIDPWGYTGTYIFTDGVVSYIGKGPLGRMVASMGQRIGGSLNAIQSAHLDFGSDKLGFMVEHRMMEKYGARYSPDF ANSERVGSPGKKLYDAADLKTQKKVDRLANKLDKNFKSSKGC |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| YpsIP31758_3692 | YP_001402646.1 | RHS/YD repeat-containing protein | Not tested | YAPI | Protein | 0.0 | 41 |
| api89 | CAF28563.1 | putative membrane-bound sugar-binding protein | Not tested | YAPI | Protein | 0.0 | 41 |
