Gene Information

Name : phoB (YpsIP31758_3136)
Accession : YP_001402096.1
Strain : Yersinia pseudotuberculosis IP 31758
Genome accession: NC_009708
Putative virulence/resistance : Virulence
Product : PhoB family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3529531 - 3530220 bp
Length : 690 bp
Strand : -
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR02154

DNA sequence : 
ATGGCAAGACGCATACTGGTGGTGGAAGATGAAGCACCAATCCGTGAGATGGTGTGCTTTGTGTTGGAGCAAAATGGCTA
CCAACCGTTAGAAGCCGAAGATTATGACAGCGCGGTAGCTCGCCTGTCGGAGCCTTTTCCTGATTTAGTGCTGTTAGACT
GGATGTTACCCGGCGGCTCGGGTATTCAGTTTATTAAACATATGAAACGTGAAGCTTTGACCCGGGATATTCCGGTGATG
ATGCTGACCGCCCGTGGCGAAGAAGAAGATCGTGTGCGCGGTTTGGAAGTGGGCGCAGATGATTATATTACCAAGCCTTT
TTCACCTAAAGAGCTGGTAGCGCGGATCAAAGCGGTGATGCGGCGGATATCGCCAATGGCCGTTGAAGAAGTGATTGAAA
TGCAAGGGTTGAGCCTTGACCCTTCATCTCACAGGGTAATGGCGAATGATCAGGCGCTAGATATGGGGCCGACCGAGTTT
AAATTATTACACTTCTTTATGACTCATCCCGAGCGTGTTTATAGCCGTGAACAGTTGCTTAATTATGTTTGGGGCACTAA
CGTTTATGTAGAAGATCGTACGGTTGATGTGCATATTCGTCGGTTACGCAAGGCGCTTGAAACTGATGGTCACGATAAAA
TGGTACAAACTGTCCGGGGAACTGGATACCGTTTCTCAACGCGCTACTGA

Protein sequence : 
MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGSGIQFIKHMKREALTRDIPVM
MLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEF
KLLHFFMTHPERVYSREQLLNYVWGTNVYVEDRTVDVHIRRLRKALETDGHDKMVQTVRGTGYRFSTRY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 7e-34 41
CDB402_0209 YP_005126722.1 two-component system response regulator Not tested Not named Protein 2e-31 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 7e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoB YP_001402096.1 PhoB family transcriptional regulator HE999704.1.gene2815. Protein 5e-39 44
phoB YP_001402096.1 PhoB family transcriptional regulator CP001918.1.gene5135. Protein 3e-24 42
phoB YP_001402096.1 PhoB family transcriptional regulator CP001138.1.gene2239. Protein 2e-33 41
phoB YP_001402096.1 PhoB family transcriptional regulator CP000647.1.gene2531. Protein 3e-34 41
phoB YP_001402096.1 PhoB family transcriptional regulator BAC0596 Protein 2e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoB YP_001402096.1 PhoB family transcriptional regulator VFG1563 Protein 4e-34 41
phoB YP_001402096.1 PhoB family transcriptional regulator VFG1702 Protein 3e-34 41