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Name : YpsIP31758_2676 (YpsIP31758_2676) Accession : YP_001401641.1 Strain : Yersinia pseudotuberculosis IP 31758 Genome accession: NC_009708 Putative virulence/resistance : Virulence Product : fimbrial usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 3029820 - 3032291 bp Length : 2472 bp Strand : - Note : identified by match to protein family HMM PF00577 DNA sequence : ATGAGCACTTCATTTTTAGTGGGTGCCCAGCGTTATTCTTTTGATCCCAATCTGCTAGTGGATGGCAATAACAACACTGA TACCTCGTTATTTGAACAGGGCAATGAATTACCGGGCACCTATTTGGTGGATATTATCTTGAATGGGAATAAAGTGGACT CTACGAATGTGACATTTCATTCGGAGAAATCGCCATCAGGAGAGCCTTTCTTGCAATCTTGCTTAACCAAGGAGCAACTA TCCCGCTATGGTGTGGATGTTGATGCCTATCCCGAGTTATCTCCAGCATTAAAAAACTCACAGACAAACCCGTGTGTCAA TTTAGCCGCTATCCCTCAGGCCAGTGAAGAGTTCCAATTTTATAATATGCAGTTGGTACTGAGTATTCCACAAGCGGCTT TACGGCCTGAAGGTGAAGTGCCAATAGAACGCTGGGATGATGGTATTACGGCTTTTTTGCTGAACTACATGGCAAATATC AGTGAAACCCAGTTTCGTCAAAATGGTGGATACCGGCGTTCACAATATATCCAGTTATATCCCGGTTTAAATTTGGGGGC GTGGCGTGTTCGTAATGCGACCAACTGGAGTCAATCTGGCGATAGGGGGGGTAAATGGCAAAGTGCTTATACCTATGCCA CTCGTGGGATTTATCGTTTAAAGAGCCGGGTGACCTTAGGGGAGAGTTACACCCCAGGTGATTTTTTCGACAGCATTCCC TTTCGTGGCGTGATGTTGGGGGACGATCCTAATATGCAGCCAAGTAACCAGCGGGATTTTATACCGGTGGTGCGTGGTAT TGCCCGTAGTCAGGCGCAGGTGGAAATCAGACAAAATGGTTATCTGATTTATAGTACGGTGGTGCCGCCGGGGCCGTTTG AACTCTCTGACGTGATCCCGAGTAAATCAGGCAGTGACCTACATGTTAGGGTGCTGGAAAGTAACGGGGCATCGCAGGCG TTTATTGTGCCTTATGAGGTGCCAGCCATTGCATTGCGCAAAGGGCATTTGCGATACAATCTGGTGGCAGGGCAGTATCG CCCCGCCAATGCTGATGTTGAGACGCCTCCGGTCGCTCAGGCAACCGTCGCCTACGGCTTGCCGTGGAACTTGACCGCAT TTATCGGTGAGCAGTGGTCGCGGCATTATCAGGCAACCTCTGCCGGATTAGGGGGGCTATTGGGGGAGTATGGCGCATTG TCATCCAGTATCACGCAGGCAACCAGTCAGTATCACCATCAACAACCGGTTAAAGGGCAAGCCTGGGAGGTTCGATACAA CAAAACCTTACAAGCCTCTGATACGTCATTTTCATTGGTGAATAGTCAATACAGCACTAATGGTTTCAGTACGTTATCTG ATGTATTACAAAGTTACCGGCAGAGCGGGAGTGGCGATAATAGAGATAAAATTGACGAAAATTCTCGGTCAAGGGATTTG CGTAACCAAATCAGTGCGGTCATCGGGCAGTCATTGGGCAAGTTTGGCTACCTGAATCTTAATTGGTCGCGGCAGGTCTA CCGTGGGCCGATTCCGGCTAAGAATTCGTTGGGAATACACTATAACCTCAATGTCGGTAATAGTTTTTGGGCACTGAGTT GGGTGCAAAATGCGAATGAGAACAAGAATGATCGGATATTGAGTTTGTCTGTCAGTATTCCGCTGGGAGGTCATCACGAT ACTTATGCTTCCTATAGAATGACATCTTCCAACGGGAGCAATGATCATGAAATAGGAATGTACGGCCAGGCTTTTGACTC TCGCTTGAGTTGGAGTGTGCGTCAGGCAGAGCATTATGGTCAACCCAACTCAGGGCATAACAGCGGCTCACTCAGGTTGG GCTGGCAGGGTTCCTATGGCAATATCGCGGGAAATTACTACTATACTCCGAGCATACGTCAGTTATCCGCTGATGTTTCC GGAGGGGCGATCATCCATCGGCATGGGCTGACATTAGGGCCGCAAATCAATGGCACCTCCGTGCTGGTTGAAGTTCCGGG CGTCGGCGGGGTGACCACCACAGAAGATCGCCGTCTGAAAACAGATTTTCGCGGTTACAGCATTGTGTCTGGCCTCTCTC CTTATCAGGAGCACGATATCGTGTTGGAAACTGCAGATTTACCGCCGGATGCGGAGGTGGCAAAAACAGATACCAAGGTC TTGCCGACCGAGGGGGCGATTGTTCGTGCCAGTTTTAGCCCGCAAATCGGGGCAAAGGCGCTGATGACGATCACCCGCGC TAATGGCCAAACCATTCCGTTTGGTGCGATGGCGAGCTTGGTTAATCAGTCGGCCAATGCAGCCATTGTCGATGAAGGGG GGAAAGCCTATCTAACCGGGTTACCGGAAACAGGGCAGTTATTGGTGCAATGGGGTAAAGATGCGGGCCAACAATGCCGG GTGGATTACCAGCTCTCGCCAGCGGAAAAAGGTGATACCGGGCTGTATATGCTCAGCGGAGTATGCCATTAA Protein sequence : MSTSFLVGAQRYSFDPNLLVDGNNNTDTSLFEQGNELPGTYLVDIILNGNKVDSTNVTFHSEKSPSGEPFLQSCLTKEQL SRYGVDVDAYPELSPALKNSQTNPCVNLAAIPQASEEFQFYNMQLVLSIPQAALRPEGEVPIERWDDGITAFLLNYMANI SETQFRQNGGYRRSQYIQLYPGLNLGAWRVRNATNWSQSGDRGGKWQSAYTYATRGIYRLKSRVTLGESYTPGDFFDSIP FRGVMLGDDPNMQPSNQRDFIPVVRGIARSQAQVEIRQNGYLIYSTVVPPGPFELSDVIPSKSGSDLHVRVLESNGASQA FIVPYEVPAIALRKGHLRYNLVAGQYRPANADVETPPVAQATVAYGLPWNLTAFIGEQWSRHYQATSAGLGGLLGEYGAL SSSITQATSQYHHQQPVKGQAWEVRYNKTLQASDTSFSLVNSQYSTNGFSTLSDVLQSYRQSGSGDNRDKIDENSRSRDL RNQISAVIGQSLGKFGYLNLNWSRQVYRGPIPAKNSLGIHYNLNVGNSFWALSWVQNANENKNDRILSLSVSIPLGGHHD TYASYRMTSSNGSNDHEIGMYGQAFDSRLSWSVRQAEHYGQPNSGHNSGSLRLGWQGSYGNIAGNYYYTPSIRQLSADVS GGAIIHRHGLTLGPQINGTSVLVEVPGVGGVTTTEDRRLKTDFRGYSIVSGLSPYQEHDIVLETADLPPDAEVAKTDTKV LPTEGAIVRASFSPQIGAKALMTITRANGQTIPFGAMASLVNQSANAAIVDEGGKAYLTGLPETGQLLVQWGKDAGQQCR VDYQLSPAEKGDTGLYMLSGVCH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| safC | NP_454907.1 | outer-membrane fimbrial usher protein | Not tested | SPI-6 | Protein | 6e-176 | 47 |
| afaC | AAD44022.2 | AfaC | Virulence | PAI-I AL862 | Protein | 5e-160 | 44 |
| afaC | ADD91743.1 | putative AfaC-VIII usher protein | Not tested | PAI-I AL862 | Protein | 5e-162 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| YpsIP31758_2676 | YP_001401641.1 | fimbrial usher protein | VFG0853 | Protein | 5e-160 | 44 |
| YpsIP31758_2676 | YP_001401641.1 | fimbrial usher protein | VFG0944 | Protein | 3e-157 | 43 |
| YpsIP31758_2676 | YP_001401641.1 | fimbrial usher protein | VFG0849 | Protein | 6e-148 | 41 |
| YpsIP31758_2676 | YP_001401641.1 | fimbrial usher protein | VFG0857 | Protein | 9e-143 | 41 |
