Gene Information

Name : YpsIP31758_2084 (YpsIP31758_2084)
Accession : YP_001401057.1
Strain : Yersinia pseudotuberculosis IP 31758
Genome accession: NC_009708
Putative virulence/resistance : Virulence
Product : DNA-binding heavy metal response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2393996 - 2394688 bp
Length : 693 bp
Strand : +
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387

DNA sequence : 
ATGCGGCTATTGTTGGTAGAAGATGAGGAGAAGACATCTTCGTATATCAATCGCGCCCTCAGCGAGTTGGGCTTTACCGT
CGATGTAGCGGCCACCGGGATCGACGGATTATATCTGGCTCTTGAGTATGATTACGATACGATTGTGCTCGATGTCATGT
TGCCCGGCATGGATGGTTACAGCGTTCTCGAAGGCCTACGCGCCAGCAAACAAACTCCGGTTCTGATGTTATCCGCCCGT
GGCTCGGTTGATGAACGAGTTAAGGGCCTGCGTCACGGTGCCGACGATTATTTGCCTAAGCCTTTTTCGCTGATTGAACT
GGTTGCGCGTATCCAGGCGTTGTTGAGGCGGCGTCCCAGTGATGGTGTAGATGTCAGCCAATTGCACATTAATGATCTAC
ATCTCGACCTGCTGGCAAGGCGTGTCACGCGAGCCGGTGAACGTCTTGAACTCACCGCCAAAGAGTTCGCCCTGTTAAGC
CTGTTAGCCAGACATCAGGGGGAAATTCTGTCAAAAATGATGATTGCAGAGCAGGTCTGGGACATGAATTTTGACAGCGA
TGCCAATGTCGTTGAGGTGGCGATAAAACGCCTGCGGGCGAAAATAGATACGCCCTACCCGGTCAAACTGCTGCATACAG
TGCGAGGCATGGGGTATGTCCTTGAAACTCGCCCCGAACGCCAGACTAAATAG

Protein sequence : 
MRLLLVEDEEKTSSYINRALSELGFTVDVAATGIDGLYLALEYDYDTIVLDVMLPGMDGYSVLEGLRASKQTPVLMLSAR
GSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRPSDGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLS
LLARHQGEILSKMMIAEQVWDMNFDSDANVVEVAIKRLRAKIDTPYPVKLLHTVRGMGYVLETRPERQTK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 9e-54 52
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-52 51

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YpsIP31758_2084 YP_001401057.1 DNA-binding heavy metal response regulator BAC0083 Protein 1e-62 62
YpsIP31758_2084 YP_001401057.1 DNA-binding heavy metal response regulator BAC0197 Protein 4e-60 58
YpsIP31758_2084 YP_001401057.1 DNA-binding heavy metal response regulator BAC0638 Protein 7e-53 57
YpsIP31758_2084 YP_001401057.1 DNA-binding heavy metal response regulator BAC0125 Protein 8e-61 56
YpsIP31758_2084 YP_001401057.1 DNA-binding heavy metal response regulator BAC0111 Protein 1e-59 54
YpsIP31758_2084 YP_001401057.1 DNA-binding heavy metal response regulator BAC0347 Protein 1e-52 51
YpsIP31758_2084 YP_001401057.1 DNA-binding heavy metal response regulator BAC0308 Protein 3e-52 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YpsIP31758_2084 YP_001401057.1 DNA-binding heavy metal response regulator VFG0596 Protein 3e-54 52
YpsIP31758_2084 YP_001401057.1 DNA-binding heavy metal response regulator VFG1389 Protein 2e-38 48
YpsIP31758_2084 YP_001401057.1 DNA-binding heavy metal response regulator VFG1390 Protein 3e-40 44
YpsIP31758_2084 YP_001401057.1 DNA-binding heavy metal response regulator VFG1386 Protein 4e-35 43
YpsIP31758_2084 YP_001401057.1 DNA-binding heavy metal response regulator VFG0473 Protein 3e-24 41