Gene Information

Name : yfeC (YpsIP31758_1703)
Accession : YP_001400680.1
Strain : Yersinia pseudotuberculosis IP 31758
Genome accession: NC_009708
Putative virulence/resistance : Virulence
Product : chelated iron ABC transporter permease YfeC
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1974619 - 1975503 bp
Length : 885 bp
Strand : -
Note : identified by similarity to SP:Q56954; match to protein family HMM PF00950; match to protein family HMM PF01032

DNA sequence : 
ATGCTGGAACTTTTACTGCAACCGTTTAATTATAATTATATGGTCAAGGCCATTTGGGTTAGTGCGATTGTGGGGGCCGT
TTGTGCTTTTCTATCCGCTTATCTGATGCTAAAAGGCTGGTCGCTGATGGGTGATGCGTTATCACACTCAGTCGTGCCTG
GGGTTGCAGGGGCTTATGCTCTTGGTTTTCCCTATGCCGCTGGCGCTTTCTTTACGGGTATGCTTGCCGCCTTGGCAATG
ACGCTAGTACGCCACATTACCCGCCTACGTGAAGATGCCATTATCGGTTTTATCTTTTCTACCTTTTTTGCTGTTGGGCT
TTTAATCGTTTCACTCAATCCCACATCAGTGAATGTTCAGTCGATCATCTTCGGCAATATTCTGGGTATTGCTGATGAAG
ATGTCTTGCAGGTAGAAATCATTATTTTGGTTTCTTTTGTGATTTTATGTTTGATCTGGAAAGATTTATTAGCGGTGTTT
TTCGATGAAAGCCACGCCATGTCAATTGGTTTATCCCCACTGCGCTTAAAAATCTTATTCTTTACGCTCCTGAGCGCCTG
TACTGTCGCCGCTTTACAAACCGTGGGGGCCATTTTAGTGATAGCTATGGTCGTCACTCCAGGGGCAACAGCCTATTTAC
TGACCGATCGTTTCGGCCGCTTGCTCATTATTGCCATTGCTATTGGGGCCATTACCAGTGCTTTCGGCGCGTATCTCAGT
TTTTATCTGGATGGGGCAACCGGTGGCGTTATTGTCACCTTACAAACACTGGTATTCCTGCTGGCCTTCTTCTTTGCCCC
CAAACACGGATTACTGGCAACCCGATACCGCACACGGTTGAAACGTCGTCATCCGCCGGTTCATCTTCCGGAGGATAACC
TATGA

Protein sequence : 
MLELLLQPFNYNYMVKAIWVSAIVGAVCAFLSAYLMLKGWSLMGDALSHSVVPGVAGAYALGFPYAAGAFFTGMLAALAM
TLVRHITRLREDAIIGFIFSTFFAVGLLIVSLNPTSVNVQSIIFGNILGIADEDVLQVEIIILVSFVILCLIWKDLLAVF
FDESHAMSIGLSPLRLKILFFTLLSACTVAALQTVGAILVIAMVVTPGATAYLLTDRFGRLLIIAIAIGAITSAFGAYLS
FYLDGATGGVIVTLQTLVFLLAFFFAPKHGLLATRYRTRLKRRHPPVHLPEDNL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 7e-80 66
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-80 66
sitC NP_461784.1 permease Virulence SPI-1 Protein 9e-80 66
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 9e-80 66
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 9e-80 66
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-44 43
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-44 43
sitD NP_461785.1 permease Virulence SPI-1 Protein 3e-44 43
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-44 43
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-44 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeC YP_001400680.1 chelated iron ABC transporter permease YfeC BAC0441 Protein 1e-124 99
yfeC YP_001400680.1 chelated iron ABC transporter permease YfeC BAC0351 Protein 4e-80 66
yfeC YP_001400680.1 chelated iron ABC transporter permease YfeC BAC0352 Protein 1e-44 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeC YP_001400680.1 chelated iron ABC transporter permease YfeC VFG0527 Protein 4e-80 66
yfeC YP_001400680.1 chelated iron ABC transporter permease YfeC VFG0528 Protein 1e-44 43