Gene Information

Name : kpsT (JJD26997_1781)
Accession : YP_001398736.1
Strain : Campylobacter jejuni 269.97
Genome accession: NC_009707
Putative virulence/resistance : Virulence
Product : capsular polysaccharide ABC transporter ATP-binding protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 1567397 - 1568059 bp
Length : 663 bp
Strand : -
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGATAAAGCTTGTTAATCTTACTAAATCTTATCCCTTATTTAGTGGTGGAAGACATTATGTTTTTAAAAATTTTAGCTT
TGAATTTCCTGAAAATTGCAGTATAGGTTTGATGGGGAGTAACGGAGCTGGAAAATCCACTCTAATGCGACTTTTAAGCG
GTGCAGAGCTTCCTGATAGTGGTAAGATAATTACTAATAAAAAACTCTCTTGGCCTTTGGGGTTAAACGGAGCTTTTCAA
GGTTCTTTAACCGCTAGAGATAATGCTAAATTTGTAGCTAGAGTGTATGGTTACAAGGGAAAAGAGCTTCAGGAAAAAGT
AAAATTCGTAGAAGACTTTGCGGAGCTGGGAAAATTTTTTGATGAGCCTATGAAGACTTATTCTTCAGGAATGAGTGCGA
GAATTGCCTTTGGGCTAAGTATGGCTTTTGAGTTTGATTATTATCTCATTGACGAGGCAGGGGCTGTTGGAGACCCTACT
TTTAGGGAAAAAAGCGTGAAAATTTACAAAGAAAGATTAAGTAAATCAAAAGTGATTATGGTTTCTCACAGCGTAGCTGA
AATTAAAGAATGGTGTGATAAAATAATTTATATGAAAAACGGACAAATCACAGTTTATGATGATGTAGATGAAGGAATAG
CTGTGTATCAAGGAAAGGCTTAA

Protein sequence : 
MIKLVNLTKSYPLFSGGRHYVFKNFSFEFPENCSIGLMGSNGAGKSTLMRLLSGAELPDSGKIITNKKLSWPLGLNGAFQ
GSLTARDNAKFVARVYGYKGKELQEKVKFVEDFAELGKFFDEPMKTYSSGMSARIAFGLSMAFEFDYYLIDEAGAVGDPT
FREKSVKIYKERLSKSKVIMVSHSVAEIKEWCDKIIYMKNGQITVYDDVDEGIAVYQGKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 1e-58 60
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 3e-58 56
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 4e-37 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
kpsT YP_001398736.1 capsular polysaccharide ABC transporter ATP-binding protein VFG1449 Protein 4e-59 60
kpsT YP_001398736.1 capsular polysaccharide ABC transporter ATP-binding protein VFG0696 Protein 2e-38 45
kpsT YP_001398736.1 capsular polysaccharide ABC transporter ATP-binding protein VFG0258 Protein 1e-37 43
kpsT YP_001398736.1 capsular polysaccharide ABC transporter ATP-binding protein VFG2563 Protein 4e-39 42