|
Name : lysS (CKL_0178) Accession : YP_001393590.1 Strain : Clostridium kluyveri DSM 555 Genome accession: NC_009706 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 165913 - 167421 bp Length : 1509 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGGCAAAAGAGGAAAAAAATTTACATGTACTGGAAGAGAATTTCAATCAATTGATAAGGGAGAGGATACAAAAGTTTAA AAATTTACAAGAGCAAAATAAAGATCCCTTTGAGGTATATAAGGTTGAGAGAACCCATACTTCAAAAGAAATAAAAGATA ACTATGAAACTTTAGATGGCACGGATGTTACTGTGGCTGGAAGACTAATGTCTAAAAGAGTTCATGGAAAGGCTGGATTT TCAGATTTGTATGATAGATATGGTAAAATTCAACTGTATATAAAGATAAATGATGTAGGAGAAGAAAAATTAAAGGAATA TAAATCCTATGATATAGGAGACATTTTATCTGTAAGTGGCAAGGTTTTTAAGACTAGGACCGGAGAAGTATCAATTCATA TTACGGATTTTCAACTTGCAGCTAAATCACTTAAACCTCTTCCAGAGAAATGGCATGGACTTAAGGATCCAGATTTAAGG TATAGACAAAGGTATGTAGATTTGATAATAAATCAGGATGTTAGAGATACCTTTTTAAAGAGGACTGCTGTAATAAGAGC TATAAGAGAATTTTTAGATGGTAGAGATTACATAGAGGTAGAGACACCAATACTGTCATCAATAGCTGGAGGAGCAGCTG CTAAGCCATTTATAACTCATCATAATGCTTTGGATATAGACATGTATTTAAGAATAGCAACTGAATTATATTTAAAAAGG CTAATAGTAGGTGGATTTGAAAAGGTATATGAGATAGGTAAAAATTTTAGAAACGAAGGAATAGATGTAAGGCATAATCC TGAATTTACAGCTATGGAATTATATGAAGCTTTTTCAGATTATAATGATATGATGGAATTAACTGAGAATATGCTGGCAT ATGTATGTGAAAAGGTGCTTGGTACTACAAAAGTTATATATCAGGATACGGAAATAGACTTTAAGCCTCCTTGGAATAGA ATTACTATGGTAGATGCAGTTAAACAATTTACGAAAGTAGATTTTAATGAAGTTGAAAGTGATGACGAAGCTAGAAAGAT TGCTGTTGAAAAAAATATTGAACTTAAAAAAGAATTAAAGGATTGTACAAAAGGGGATATATTAGTAGGAATGTTTGAAG AATTTTGTGAACATAAATTTATTCAACCAACTTTTGTAATGGATTATCCTGTTGAAATATCACCTTTAACTAAAAAGAAA AGAGGAAATGATAAATATACTGAGAGATTTGAGGGCTTTATATTTGGTAGAGAGGTATGTAATGCATATTCAGAGTTAAA TGATCCTATAGTGCAGAGGGAAAGATTTATGCAGCAGATAAGAGAAAGAGAATTAGGGGATGATGAAGCTTATATGATGG ATGAAGATTTTATAAATGCTCTTGAAATAGGTATGCCTCCTACGGGAGGACTTGGAATAGGTCTGGATAGAATTATAATG TTTCTTACGAATTCTTATTCTATAAGAGATGTCATATTATTTCCTACTATGAAGCCAAGTCAACAGTAG Protein sequence : MAKEEKNLHVLEENFNQLIRERIQKFKNLQEQNKDPFEVYKVERTHTSKEIKDNYETLDGTDVTVAGRLMSKRVHGKAGF SDLYDRYGKIQLYIKINDVGEEKLKEYKSYDIGDILSVSGKVFKTRTGEVSIHITDFQLAAKSLKPLPEKWHGLKDPDLR YRQRYVDLIINQDVRDTFLKRTAVIRAIREFLDGRDYIEVETPILSSIAGGAAAKPFITHHNALDIDMYLRIATELYLKR LIVGGFEKVYEIGKNFRNEGIDVRHNPEFTAMELYEAFSDYNDMMELTENMLAYVCEKVLGTTKVIYQDTEIDFKPPWNR ITMVDAVKQFTKVDFNEVESDDEARKIAVEKNIELKKELKDCTKGDILVGMFEEFCEHKFIQPTFVMDYPVEISPLTKKK RGNDKYTERFEGFIFGREVCNAYSELNDPIVQRERFMQQIRERELGDDEAYMMDEDFINALEIGMPPTGGLGIGLDRIIM FLTNSYSIRDVILFPTMKPSQQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 8e-106 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001393590.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 5e-106 | 47 |
