Gene Information

Name : CLI_1666 (CLI_1666)
Accession : YP_001390928.1
Strain : Clostridium botulinum Langeland
Genome accession: NC_009699
Putative virulence/resistance : Resistance
Product : antibiotic transporter response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1764556 - 1765215 bp
Length : 660 bp
Strand : +
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence :
ATGTCGAAAATACTTGTAATTGATGATGAAGAAGATATTTTAGCCCTTGTTAAAAATGTTCTTTCCAAGGATAATCACTT
AGTAACTACAGTAAAGAAAGCAAAAGATATTCCGTTAAATGATTTTGTAAAATTTGATCTGATTTTACTAGATGTAATGA
TGCCTGATATTGATGGCTTCACTTTGTGTAAGGAAATTAGAGAGATGGTAGACTGTCCAATTCTTTTTTTAACAGCAAAA
ACTATGGAAAGCGACATTATGTTTGGATTAGGAATTGGTGGAGATGATTATATAACGAAACCTTTTGGAGTAGGAGAACT
AAGAGCTAGAGTAAATGCTCATCTACGCAGGGAACATCGTGAAAAACGTCATATTTTTGTAGCTTCAGATATTATATTTA
ATCTATCCAGTAAGGAAATTAAAATAGGCGATGTAAAGGTGGCCTTCACAAAGGGAGAATATGCTATATGTGAATACCTT
GCAAGAAATTCAGGGCAGGTGTTTTCTAAAGAACAAATATATGAAGCGGTTTATGGGTATGATGGAGAAAGTGATAGCTC
TGCTATTACAGAGCATATTAAAAATATTAGAGCTAAGTTAAAAGTTTTTGATATATCACCAATAGAAACAGTCTGGGGGA
TTGGTTACAAATGGGTATAA

Protein sequence :
MSKILVIDDEEDILALVKNVLSKDNHLVTTVKKAKDIPLNDFVKFDLILLDVMMPDIDGFTLCKEIREMVDCPILFLTAK
TMESDIMFGLGIGGDDYITKPFGVGELRARVNAHLRREHREKRHIFVASDIIFNLSSKEIKIGDVKVAFTKGEYAICEYL
ARNSGQVFSKEQIYEAVYGYDGESDSSAITEHIKNIRAKLKVFDISPIETVWGIGYKWV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSU05_0907 YP_001198273.1 NisR Not tested 89K Protein 5e-40 47
SSU98_0912 YP_001200470.1 NisR Not tested 89K Protein 1e-25 47
nisR2 YP_006309922.1 NisR Not tested FWisland_1 Protein 2e-39 44
nisR YP_006309898.1 NisR Not tested FWisland_1 Protein 8e-44 43