Gene Information

Name : CLI_1133 (CLI_1133)
Accession : YP_001390399.1
Strain : Clostridium botulinum Langeland
Genome accession: NC_009699
Putative virulence/resistance : Resistance
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1173868 - 1174569 bp
Length : 702 bp
Strand : +
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGAAGAAACTCTTTAAAATATTAGTTGTAGATGATGAAGAAAGGATATTAGATGTGGTAAAAGCTTATTTAGAAAAAGA
AGATTATGAAGTGATAACTGCAATGGATGGTGAGGAAGCAATTAAGTTATTTAAAGAAACATCATTTCATTTAATTATAT
TGGATTTAATGCTACCAAAGTTATCTGGTGAAGAGGTTTGTTCAAAGATAAGAGAATCTTCTAATGTTCCAATTATTATG
CTTACAGCAAAGGTAGAGGAAGAGGATAAGCTAGAAGGTCTTTCTATAGGAGCAGATGATTATCTTACAAAACCTTTTAG
TGTAAGGGAACTTGTGGCAAGAGTCAAGGCTCTTATTAGAAGGGCATATAGAGGAAAGTATCCATTGGCAGAGCATCTAA
TACTTAATGATGGAGACTTAGAAGTTGACATAAGAAAAATGAAAGTATTAAAAAACGGAAAGGCGGTTACATTAACACCT
TATGAGTTTAAAGTGCTTGTTTCACTATTAACTAATCCAGGGCAGGTTTTTACTAGAGAACAGTTAGTTGAACAAGCTTT
TGGATATGATTATGAAAGCTTTAATAGGACTGTAGATACTTATATAAAAAATATAAGACAAAAGATAGAAGATAATCCTA
AAGCACCTAACTATATTACTACTGTATATGGAGTTGGATACAGATTTGGAGGAAAAAATTAA

Protein sequence : 
MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLPKLSGEEVCSKIRESSNVPIIM
LTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYRGKYPLAEHLILNDGDLEVDIRKMKVLKNGKAVTLTP
YEFKVLVSLLTNPGQVFTREQLVEQAFGYDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRFGGKN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
nisR2 YP_006309922.1 NisR Not tested FWisland_1 Protein 4e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLI_1133 YP_001390399.1 DNA-binding response regulator NC_012469.1.7685629. Protein 5e-39 50
CLI_1133 YP_001390399.1 DNA-binding response regulator HE999704.1.gene2815. Protein 1e-38 45
CLI_1133 YP_001390399.1 DNA-binding response regulator NC_012469.1.7686381. Protein 5e-39 45
CLI_1133 YP_001390399.1 DNA-binding response regulator NC_002952.2859905.p0 Protein 2e-38 44
CLI_1133 YP_001390399.1 DNA-binding response regulator NC_002745.1124361.p0 Protein 3e-38 44
CLI_1133 YP_001390399.1 DNA-binding response regulator NC_009782.5559369.p0 Protein 3e-38 44
CLI_1133 YP_001390399.1 DNA-binding response regulator NC_002951.3237708.p0 Protein 3e-38 44
CLI_1133 YP_001390399.1 DNA-binding response regulator NC_003923.1003749.p0 Protein 3e-38 44
CLI_1133 YP_001390399.1 DNA-binding response regulator NC_002758.1121668.p0 Protein 3e-38 44
CLI_1133 YP_001390399.1 DNA-binding response regulator NC_007622.3794472.p0 Protein 2e-38 44
CLI_1133 YP_001390399.1 DNA-binding response regulator NC_009641.5332272.p0 Protein 3e-38 44
CLI_1133 YP_001390399.1 DNA-binding response regulator NC_013450.8614421.p0 Protein 3e-38 44
CLI_1133 YP_001390399.1 DNA-binding response regulator NC_007793.3914279.p0 Protein 3e-38 44
CLI_1133 YP_001390399.1 DNA-binding response regulator AE016830.1.gene1681. Protein 1e-36 44
CLI_1133 YP_001390399.1 DNA-binding response regulator AM180355.1.gene1830. Protein 3e-34 44
CLI_1133 YP_001390399.1 DNA-binding response regulator AF155139.2.orf0.gene Protein 2e-36 43
CLI_1133 YP_001390399.1 DNA-binding response regulator CP000675.2.gene1535. Protein 1e-39 43
CLI_1133 YP_001390399.1 DNA-binding response regulator NC_014475.1.orf0.gen Protein 1e-35 43
CLI_1133 YP_001390399.1 DNA-binding response regulator AF130997.1.orf0.gene Protein 1e-31 43
CLI_1133 YP_001390399.1 DNA-binding response regulator NC_005054.2598277.p0 Protein 1e-35 43
CLI_1133 YP_001390399.1 DNA-binding response regulator DQ212986.1.gene4.p01 Protein 7e-34 43
CLI_1133 YP_001390399.1 DNA-binding response regulator FJ349556.1.orf0.gene Protein 5e-36 41
CLI_1133 YP_001390399.1 DNA-binding response regulator AF162694.1.orf4.gene Protein 4e-30 41
CLI_1133 YP_001390399.1 DNA-binding response regulator AE000516.2.gene3505. Protein 2e-35 41
CLI_1133 YP_001390399.1 DNA-binding response regulator CP000034.1.gene2186. Protein 4e-39 41
CLI_1133 YP_001390399.1 DNA-binding response regulator CP001138.1.gene2239. Protein 4e-39 41
CLI_1133 YP_001390399.1 DNA-binding response regulator CP000647.1.gene2531. Protein 1e-38 41
CLI_1133 YP_001390399.1 DNA-binding response regulator NC_002695.1.916589.p Protein 3e-39 41
CLI_1133 YP_001390399.1 DNA-binding response regulator CP001918.1.gene3444. Protein 7e-39 41
CLI_1133 YP_001390399.1 DNA-binding response regulator BAC0039 Protein 4e-39 41
CLI_1133 YP_001390399.1 DNA-binding response regulator BAC0596 Protein 4e-39 41
CLI_1133 YP_001390399.1 DNA-binding response regulator AF253562.2.orf0.gene Protein 5e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLI_1133 YP_001390399.1 DNA-binding response regulator VFG1389 Protein 3e-29 41