Gene Information

Name : CLC_3294 (CLC_3294)
Accession : YP_001389074.1
Strain : Clostridium botulinum Hall
Genome accession: NC_009698
Putative virulence/resistance : Resistance
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3453619 - 3454311 bp
Length : 693 bp
Strand : -
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
TTGAGTTATAAAATATTAATAGTAGATGATGATAAGACCATAGTAGAATTTTTACAAATATTTTTAATTAAAGAAGGATA
TGATGTAAGGATTTCTTATAATGGAGAAGAGGCTTTAGATAAAATAAGAAGTGAACAATTTAATTTAATTCTAATGGATA
TAATGATGCCTAAATTAGATGGATTCGAAGCTATTAAAAGAATAAGAAGACTTACCAATATTCCTATTATATTTTTAACT
ACAAAAGATAGTCAGCAAGATAAAATTAAAGGCTTTATTTCTGGATGTGACGACTACATAACAAAGCCCTTTGATTTAGT
GGAGCTTTCTTTAAGAGTGTCCGCTATACTTAAAAGAGTTAGCACAAGTGTAGCTGAAGAAAATAAGGATATTATAAAAG
TAAAGGATTTAGAACTAAATTTAAAAGAGCACACATTATATAAAGAAAAAAATGAAATAAAGCTTACTCCAAAGGAATTT
GACATTTTATTTTTGCTTGCTAGAAATAAGGGAAGAATTTTTCCATCGAGTGAGATATATGAAAGGGTATGGGGACAAGA
ATTTTTAGAAAATGACAATAGCTTGTTGACCCATATTAGAAATTTAAGAGAAAAGCTAAGTGATACTGTAAAAAACTCAA
AATACATTAAAACTGTTTGGGGAGTGGGTTATAAGATTGAAAAGGAAGCTTAG

Protein sequence : 
MSYKILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSEQFNLILMDIMMPKLDGFEAIKRIRRLTNIPIIFLT
TKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVSTSVAEENKDIIKVKDLELNLKEHTLYKEKNEIKLTPKEF
DILFLLARNKGRIFPSSEIYERVWGQEFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEKEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
vanRB YP_001698483.1 regulatory protein Not tested Not named Protein 2e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLC_3294 YP_001389074.1 DNA-binding response regulator NC_005054.2598277.p0 Protein 6e-44 45
CLC_3294 YP_001389074.1 DNA-binding response regulator NC_014475.1.orf0.gen Protein 6e-44 45
CLC_3294 YP_001389074.1 DNA-binding response regulator AF155139.2.orf0.gene Protein 5e-46 45
CLC_3294 YP_001389074.1 DNA-binding response regulator AM180355.1.gene1830. Protein 7e-42 44
CLC_3294 YP_001389074.1 DNA-binding response regulator DQ212986.1.gene4.p01 Protein 5e-43 43
CLC_3294 YP_001389074.1 DNA-binding response regulator FJ349556.1.orf0.gene Protein 1e-48 43