Gene Information

Name : CLC_2560 (CLC_2560)
Accession : YP_001388398.1
Strain : Clostridium botulinum Hall
Genome accession: NC_009698
Putative virulence/resistance : Virulence
Product : capsular exopolysaccharide family protein
Function : -
COG functional category : D : Cell cycle control, cell division, chromosome partitioning
COG ID : COG0489
EC number : -
Position : 2686069 - 2686779 bp
Length : 711 bp
Strand : -
Note : identified by match to protein family HMM TIGR01007

DNA sequence : 
TTGGATAGAAACTTAAGTTTGATAACTATAAAAGAACCAAAGTCCCCAATATCCGAAGCCTATAGGACATTAAGAACTAA
TATACAATTTTCATCCTTTGATGAAAAAATAAGTGTAATTTTTATGACTAGTTCTACTCCAGGAGAGGGTAAATCTACAA
CTTCAGCGAATTTAGCCATAACTATGGCACAAAATGGTTCAGAAACTATTTTGGTAGATTGTGATCTTAGAAAACCTAAT
GTACATAAGTTATTTAAGCTATCTAATACAAGGGGATTATCTAATTTACTGATAGAAGACAATGGTATAGATAAGGTAAT
ACAACAAAGCAGTATAGAAAATCTACATATTTTAACTTCAGGAATAAAGCCACCTAATCCCTCAGAGTTATTATCTTCTA
AAAAAATGAAAAAATTTATAGAGATGAGTAAAGAACATTATGATTATATAATATTAGATACCCCACCTGTAGGAGTGGTT
ACAGATGCTCAATTGGTATCCCAGTATTCAGATGGAGGGATATTAGTTACAGCTTCTGGACAGGTTGAAAGAGAATTAGC
TATAAGAGCAAAACAACTTTTACAAAAAGTCAATGCAAAAATACTAGGAGTAGTATTAAATAAGGTAGATACAAGCTCTG
GGAATGGATACAGATATTACAATTATTATTATGAAGAAGATGGAAAAAAGAAAAAAAGAAGCAAAAAATAA

Protein sequence : 
MDRNLSLITIKEPKSPISEAYRTLRTNIQFSSFDEKISVIFMTSSTPGEGKSTTSANLAITMAQNGSETILVDCDLRKPN
VHKLFKLSNTRGLSNLLIEDNGIDKVIQQSSIENLHILTSGIKPPNPSELLSSKKMKKFIEMSKEHYDYIILDTPPVGVV
TDAQLVSQYSDGGILVTASGQVERELAIRAKQLLQKVNAKILGVVLNKVDTSSGNGYRYYNYYYEEDGKKKKRSKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0061 YP_300151.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 9e-38 44
cap1B AAA64641.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 4e-35 43
cpsFD YP_006310771.1 putative autophosphorylating protein tyrosine kinase Not tested FWisland_4 Protein 8e-31 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLC_2560 YP_001388398.1 capsular exopolysaccharide family protein VFG1298 Protein 3e-35 43
CLC_2560 YP_001388398.1 capsular exopolysaccharide family protein VFG1368 Protein 3e-28 43
CLC_2560 YP_001388398.1 capsular exopolysaccharide family protein VFG1349 Protein 2e-31 41