Gene Information

Name : CLC_1544 (CLC_1544)
Accession : YP_001387408.1
Strain : Clostridium botulinum Hall
Genome accession: NC_009698
Putative virulence/resistance : Resistance
Product : peptide ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1615058 - 1615756 bp
Length : 699 bp
Strand : +
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGTATCTTTCATTAAAAAATATAGGTAAAAAATTTAATATAACAGGTAGAGAATTTTGGGTACTTAAAGATATAAACTT
AGAAATAGAAAAGGGGAATATTGTTACTATTTTAGGGCCTTCTGGATCAGGAAAATCTACTTTATTAAATATAATAGGAG
GCATAGATAAGGCAGATAGTGGTGAGTTTGTTTTAAAGGAGAACATTATAAGTAATCTTAAAGATCAAGAGCTTACTTTA
TATAGAAGAGAAAAATTAGGTTTTGTATTTCAATTTTACAATTTAATACCTAATCTTACGGTGTGGGAAAATGTAGAAGT
TACCTCCAATATAAGTAATAATCCTAGAGATATTAAAGAAATATTAAAAAAAGTTCAGTTATATGATAAAAGAGATAAGT
TTCCACAGGAGTTAAGTGGTGGAGAACAACAAAGGGTTTCTATAGCTAGGGCCATTATAAAAAATCCAGAATTGCTTTTG
TGTGATGAACCTACAGGAGCTTTAGATTATACTACATCAAAGGAAATTCTAAAATTATTAGAAGAAATAAATAAGGAATT
TAATACTACAATTTTAATAGTAACTCACAATGAAGCTATAGCTTCCATAAGTGACAAGATAGTAAAGATTAGGGATGGGG
GAATTTCTGAATTTATAGATAATAAAGAAAAGATTTCAGCAGAGATGGTGGTGTGGTAA

Protein sequence : 
MYLSLKNIGKKFNITGREFWVLKDINLEIEKGNIVTILGPSGSGKSTLLNIIGGIDKADSGEFVLKENIISNLKDQELTL
YRREKLGFVFQFYNLIPNLTVWENVEVTSNISNNPRDIKEILKKVQLYDKRDKFPQELSGGEQQRVSIARAIIKNPELLL
CDEPTGALDYTTSKEILKLLEEINKEFNTTILIVTHNEAIASISDKIVKIRDGGISEFIDNKEKISAEMVVW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 2e-21 43
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-30 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-31 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-31 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLC_1544 YP_001387408.1 peptide ABC transporter ATP-binding protein NC_012469.1.7685735. Protein 6e-45 47
CLC_1544 YP_001387408.1 peptide ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 6e-35 45
CLC_1544 YP_001387408.1 peptide ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 2e-36 43
CLC_1544 YP_001387408.1 peptide ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 3e-35 42