Gene Information

Name : Oant_4093 (Oant_4093)
Accession : YP_001372624.1
Strain :
Genome accession: NC_009668
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 1523664 - 1524941 bp
Length : 1278 bp
Strand : +
Note : TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rde:RD1_1049 TRAP dicarboxylate transporter, DctM subunit

DNA sequence : 
ATGGGCCTGACCCTTCTTCTTGGCTCGTTCGTGCTGGGCCTTGCCATCGGCTTGCCCGTAGCTGTGACATTGGGCCTTTC
CTCGATGGCCTATCTTCTGTTCGCGGACATCCCCTTGGTTGTCATCCCGCAGAAAATGTATGCCGGGATGGACAGCTTTG
TTCTGCTCTGCATTCCAGGGTTCATTCTGGCTGGTAACCTTATGAATTCCGGCGGCATTACCGAACGGATTATTCGCTTT
GCAAATGCCCTTGTGGGCTGGATGCGCGGCGGGCTGGCACAGGCCAATATCGCAGCCTCGATGCTTTTCGGCGGTATTTC
AGGAACCGCAGTCGCAGATGTAGCTTCCGTTGGCGGCATGATGATCCCCGGCATGAAGAAGGTTGGTTATCCGGCCGATT
TCTCCGCTGCAGTCACAGCCGCCTCATCGACTGTCGGCCCGATGATCCCGCCAAGCGTGCCGATGATTATCGTCGGATCG
CTCTCCGGCCTTTCGGTCGGCAAGTTATTTCTAGCCGGTGCGGTACCCGGCCTTCTGATGGGTTTTGCCATGATGGTGAC
GACCTATTTCATCGCCAAGAAGAAAAACTTCCCTCGCGAGGACTGGAAGGGCGCCCGAGAGTTGCTGTCGTCATTCACCG
GAGCGATCTGGGCTATAGCAATGACCGCACTGATCGTGGGTGGCCTGCTGATCGGCATCACGACACCGACCGAAACGGCA
GTGGTTGCATGCCTTTATGCGGCGGTGGTGGGGCTGTTCGTCGATAGAGAACTGCCGGTAAGTCGGATTCCGAAAATCAT
CATTGATAGTGCAATCAGTTCGGCAGGCATTCTCGTACTGGTGGGCACAGCCAATGTGTTCGGCTGGATTCTCGTCGCCG
AACGTATTCCGCAGACATTGGCCAATGCGGTTCTCTCCATCACCGATAACAAGTTTCTCGTTATCCTGCTGATCAACATT
CTGCTTCTGTTCGTCGGCATGTTCATGGAAACGATTGCAGCCCTGATCATTCTATTCGTACCATTGCAGGCTCTAGCCTT
GGCAGTCGGTATCGACCCCATTCATTTTGCGTGTTTTGCGGTCCTGAACCTTATGATCGGCCTGACTACACCACCGGTCG
GCGTTTGCCTGTTTGTCGCGTCCAATATTGCGCGTCTCCCACTCTCGCCGGTGATCAGGGCGATCATTCCCTATATCATC
ACCAATCTGATTGTCCTTTTGATGGTCAGCTACATGCCGCCTCTGGCGACCTGGCTGCCCAACACGCTGATGCCGTGA

Protein sequence : 
MGLTLLLGSFVLGLAIGLPVAVTLGLSSMAYLLFADIPLVVIPQKMYAGMDSFVLLCIPGFILAGNLMNSGGITERIIRF
ANALVGWMRGGLAQANIAASMLFGGISGTAVADVASVGGMMIPGMKKVGYPADFSAAVTAASSTVGPMIPPSVPMIIVGS
LSGLSVGKLFLAGAVPGLLMGFAMMVTTYFIAKKKNFPREDWKGARELLSSFTGAIWAIAMTALIVGGLLIGITTPTETA
VVACLYAAVVGLFVDRELPVSRIPKIIIDSAISSAGILVLVGTANVFGWILVAERIPQTLANAVLSITDNKFLVILLINI
LLLFVGMFMETIAALIILFVPLQALALAVGIDPIHFACFAVLNLMIGLTTPPVGVCLFVASNIARLPLSPVIRAIIPYII
TNLIVLLMVSYMPPLATWLPNTLMP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 7e-51 43
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 5e-51 43
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 7e-51 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Oant_4093 YP_001372624.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 3e-51 43