Gene Information

Name : Shew185_0813 (Shew185_0813)
Accession : YP_001365033.1
Strain : Shewanella baltica OS185
Genome accession: NC_009665
Putative virulence/resistance : Resistance
Product : beta-lactamase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG2602
EC number : 3.5.2.6
Position : 952608 - 953495 bp
Length : 888 bp
Strand : +
Note : PFAM: penicillin-binding protein transpeptidase; KEGG: sbl:Sbal_3522 beta-lactamase

DNA sequence :
ATGCGTTCGTTCGCCATATCGACTGTGTTGGTGATGTCCTCACTGTTAGCGTCGTCAATCATAGCTGCCCCGACATTTGC
CTCAACAGCGGCGAAGACGGAGTGGCAAGAAACCCGCAGTTGGGATGCCATTTTTACTCAGCACCAAGTTGAACCGCAAC
AAGCTAAGCAACTACAAGCTAAACCGCAAAAAACTAAGCCCCAACAAGCCTCGGGCGTGGTGGTGCTGTGGAACGAAAAC
AAGCAACAGGGATATACCAACAATCTTAAACGTGCCAATCAAGGTTTTTTACCAGCATCGACCTTTAAAATCCCCAATAG
CTTGATTGCGCTCGAGTTGGGTGTGGTGAAGGATGAGCACCAAGTGTTTAAGTGGGATGGTAAAAGTCGTGATATCGCCA
CTTGGAATCGTGACCACAACTTGATTACCGGGATGAAGTATTCGGTTGTGCCTGTCTATCAAGAGTTTGCCCGCCAAATT
GGTGAGGCGCGGATGTCGAAGATGATCGCCTCCTTCGATTATGGCAATGAGGATATCTCGGGTAACTTAGATAGCTTTTG
GCTCGATGGCGGTATTCGGATTTCTGCCACTGAGCAAATTGATTTCCTGCGTCGGCTTTATCACAACAAGATCCATGCCT
CAGAGCGCAGTCAACGAATCGTTAAGCAAGCCATGCTCACCGAGGCGAATTCTGACTATATTATTCGCGCAAAAACCGGC
TATGCGGTCAGAGCTGAACCAAGTATTGGCTGGTGGGTGGGTTGGGTAGAACTCGATGATAATGTGTGGTTTTTTGCAAT
GAATATGGATATACCCGACGCCGCAGGTTTGCCATTGCGTCAAGCCATCACTAAAGAAGTTTTAAAACTGGAACACGTTA
TTCCTTAG

Protein sequence :
MRSFAISTVLVMSSLLASSIIAAPTFASTAAKTEWQETRSWDAIFTQHQVEPQQAKQLQAKPQKTKPQQASGVVVLWNEN
KQQGYTNNLKRANQGFLPASTFKIPNSLIALELGVVKDEHQVFKWDGKSRDIATWNRDHNLITGMKYSVVPVYQEFARQI
GEARMSKMIASFDYGNEDISGNLDSFWLDGGIRISATEQIDFLRRLYHNKIHASERSQRIVKQAMLTEANSDYIIRAKTG
YAVRAEPSIGWWVGWVELDDNVWFFAMNMDIPDAAGLPLRQAITKEVLKLEHVIP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
bla OXA-10 CAJ77047.1 Oxacillinase Not tested AbaR1 Protein 1e-57 50
blaOXA-129 AET25386.1 OXA-129 beta-lactamase Not tested PAGI-2(C) Protein 4e-53 48
bla OXA-129 AFG30109.1 OXA-129 beta-lactamase Not tested PAGI-2 Protein 4e-53 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shew185_0813 YP_001365033.1 beta-lactamase HM015773.1.gene6.p01 Protein 9e-97 77
Shew185_0813 YP_001365033.1 beta-lactamase HQ700343.1.gene1.p01 Protein 1e-93 76
Shew185_0813 YP_001365033.1 beta-lactamase JN205800.1.gene6.p01 Protein 2e-96 76
Shew185_0813 YP_001365033.1 beta-lactamase AY500137.1.gene1.p01 Protein 5e-97 72
Shew185_0813 YP_001365033.1 beta-lactamase AY343493.1.gene1.p01 Protein 2e-70 55
Shew185_0813 YP_001365033.1 beta-lactamase U37105.2.gene2.p01 Protein 6e-58 50
Shew185_0813 YP_001365033.1 beta-lactamase AM412777.1.gene1.p01 Protein 3e-57 50
Shew185_0813 YP_001365033.1 beta-lactamase NC_010410.6002874.p0 Protein 6e-58 50
Shew185_0813 YP_001365033.1 beta-lactamase X75562.1.gene1.p01 Protein 3e-55 49
Shew185_0813 YP_001365033.1 beta-lactamase U59183.1.gene3.p01 Protein 3e-57 49
Shew185_0813 YP_001365033.1 beta-lactamase Z22590.1.gene1.p01 Protein 2e-57 49
Shew185_0813 YP_001365033.1 beta-lactamase AY445080.1.gene1.p01 Protein 3e-57 49
Shew185_0813 YP_001365033.1 beta-lactamase AJ854182.1.gene1.p01 Protein 1e-57 49
Shew185_0813 YP_001365033.1 beta-lactamase AF231133.1.gene3.p01 Protein 6e-56 49
Shew185_0813 YP_001365033.1 beta-lactamase X58272.1.gene1.p01 Protein 1e-53 49
Shew185_0813 YP_001365033.1 beta-lactamase AM932669.1.gene2.p01 Protein 3e-53 48
Shew185_0813 YP_001365033.1 beta-lactamase AY619003.1.gene1.p01 Protein 3e-30 42
Shew185_0813 YP_001365033.1 beta-lactamase EU086834.1.gene1.p01 Protein 5e-32 42
Shew185_0813 YP_001365033.1 beta-lactamase EU086830.1.gene1.p01 Protein 6e-32 41
Shew185_0813 YP_001365033.1 beta-lactamase JF273470.1.gene1.p01 Protein 3e-32 41
Shew185_0813 YP_001365033.1 beta-lactamase AY423074.1.gene1.p01 Protein 2e-34 41