Gene Information

Name : Shew185_0536 (Shew185_0536)
Accession : YP_001364767.1
Strain : Shewanella baltica OS185
Genome accession: NC_009665
Putative virulence/resistance : Resistance
Product : O-succinylhomoserine (thiol)-lyase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0626
EC number : 2.5.1.48
Position : 614178 - 615341 bp
Length : 1164 bp
Strand : +
Note : TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: sbl:Sbal_3776 O-succinylhomoserine (thiol)-lyase

DNA sequence :
ATGGCAGAGCGTCAATTAGCCACACTGGCAGTGCGTCAGGGTATCGAAAGCGATACTCAATATGGCGCAGTTGTGCCACC
GATTTATTTGTCGACTAATTACGCCTTCGATGGTCATAAAAATCCTCGCGAATTCGATTACAGTCGTTCAGGCAACCCAA
CACGCTGTATTTTAGGCGAAGCATTAGCGCAATTAGAAAAGGGCGCCACTGGCATAGTGACCTGCACTGGCATGGCGGCC
ATCACCTTAGTGACCACTTTGCTCGGCCCCGATGATCTATTGGTGGTGCCCCACGATTGTTACGGCGGTTCTTACCGTTT
ATTTACTAATTTGGCGAAGAAAGGCCAGTTTAAGCTGATTGTGGTTGATCAAACCGACAGCCAAGCGTTAACCGCAGCGA
TCGCGCAAAATCCTAAGATGGTGTGGCTCGAAACCCCGTCTAACCCGCTATTGCGTGTGGTGGATATCGAGGCTATTGCT
AAGGCAAGCCATGAGGTCGGCGCGCTGGTGGTGGTCGATAACACTTTTTTATCGCCGATATTGCAACAACCCCTATTGTT
AGGCGCGGATATCGTTATCCACTCCACCACTAAATACATCAATGGTCACAGCGATGTGGTTGGCGGCGCTGTGGTTGCCA
AAGATGCACAAATTGGCGAAAGCTTACATTGGTGGTCGAACACGTTAGGCTTAACGGGATCGGCATTTGATAGTTACTTA
ACCCTGCGCGGCCTACGTACCTTAGCGGTGCGAATTCGTGAACATCAAGCCAATGCCCAGCGCATTGTTGAGGTGTTAAC
GCAAAGCTCTGTGGTGAGCAAAGTTTATTACCCTGGTCTTGCGGATCACCCAGGTCATGCCATTGCCGCCAAGCAACAAA
AGGGCTTTGGCGCTATGCTGAGTTTTGAGCTCAAAGGCGGTGAGGCCGAAGTGGTGGCCTTTTTAGGTGCACTCAGCTTA
TTTAGCGTGGCGGAAAGTTTAGGTGGCGTTGAAAGTTTAGTGGCCGTGCCCGCAACTATGACCCACAGAGCCATGGAGCC
GCAGGCGCGCTTCGAGGCAGGCATTAAGGACACCCTATTGCGTCTATCGGTGGGTATTGAAGATGCCGCCGATTTAGTTG
CAGATATTCAAGCAGGATTAGCCGCCGTTGCGGCTTGTCAGTAG

Protein sequence :
MAERQLATLAVRQGIESDTQYGAVVPPIYLSTNYAFDGHKNPREFDYSRSGNPTRCILGEALAQLEKGATGIVTCTGMAA
ITLVTTLLGPDDLLVVPHDCYGGSYRLFTNLAKKGQFKLIVVDQTDSQALTAAIAQNPKMVWLETPSNPLLRVVDIEAIA
KASHEVGALVVVDNTFLSPILQQPLLLGADIVIHSTTKYINGHSDVVGGAVVAKDAQIGESLHWWSNTLGLTGSAFDSYL
TLRGLRTLAVRIREHQANAQRIVEVLTQSSVVSKVYYPGLADHPGHAIAAKQQKGFGAMLSFELKGGEAEVVAFLGALSL
FSVAESLGGVESLVAVPATMTHRAMEPQARFEAGIKDTLLRLSVGIEDAADLVADIQAGLAAVAACQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAR0460 YP_039909.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 3e-59 41
SAS0418 YP_042545.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 2e-60 41
metB YP_281510.1 cystathionine beta-lyase Not tested Not named Protein 2e-52 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shew185_0536 YP_001364767.1 O-succinylhomoserine (thiol)-lyase BAC0207 Protein 7e-53 41