Gene Information

Name : rph (Shew185_0369)
Accession : YP_001364601.1
Strain : Shewanella baltica OS185
Genome accession: NC_009665
Putative virulence/resistance : Unknown
Product : ribonuclease PH
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG0689
EC number : 2.7.7.56
Position : 413503 - 414216 bp
Length : 714 bp
Strand : +
Note : RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs

DNA sequence :
ATGCGTCCAAGTAACAGAACGCCAGCACAAACTCGTCCCATCACTATCACTCGCCAGTTTACGGCCCATGCCGAAGGTTC
TGTGTTAGTGGAATTTGGCGAAACGAAAGTGCTTTGTACCGCCAGTTTTACTGAAGGTGTGCCACGTTTCCTTAAAGGTC
AGGGTCAAGGCTGGGTGACGGCGGAATACGGCATGTTGCCACGTTCGACCCATAGCCGTATGGATCGTGAAGCCGCTCGC
GGTAAGCAATCTGGCCGTACGCAAGAAATTCAACGTCTTATCGGCCGTGCTCTGCGCGCTTGTGTAGATATGAAAGCCCT
AGGCGAAAACACTATCGTGATCGACTGTGATGTGATCCAAGCTGACGGTGGCACGCGCACTGCCTCTATCACTGGCGCCT
GTGTGGCCTTAGTGGATGCGTTGAACTGGGCGCGTGGTAAAGGCATCATTAAATCTAACCCGCTGAAATTCCTTATCGCT
GCTGTCAGCGTCGGTATTTACAAGGGTGAAGCGATCAGCGATCTAGAATATATCGAAGACAGCGCCGCTGAAACTGACAT
GAACGTGGTGATGACGGAAACGGGAAAGATCATCGAAATTCAAGGCACCGCCGAAGGCGAGCCATTCAGCCATGAAGAAT
TACTCGAACTGTTGGCATTGGCGAAGAACAGTATTCGTGAAATCGTCGATGTGCAGAAAGCCGCACTGAACTAA

Protein sequence :
MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVTAEYGMLPRSTHSRMDREAAR
GKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQADGGTRTASITGACVALVDALNWARGKGIIKSNPLKFLIA
AVSVGIYKGEAISDLEYIEDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLELLALAKNSIREIVDVQKAALN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
rph YP_001800860.1 ribonuclease PH Not tested Not named Protein 1e-60 58