Gene Information

Name : Shew185_0286 (Shew185_0286)
Accession : YP_001364520.1
Strain : Shewanella baltica OS185
Genome accession: NC_009665
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 325627 - 326304 bp
Length : 678 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sbl:Sbal_0293 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGAAAATACTTTTAGTTGAAGATGATGCGACGACGATTGATTACATCGTCAAAGGATTTCTTGAGCAGGGCCACAATAT
CGAAACGGCGAGCGATGGCCACCAAGGTTTGTCACTCGCCACGAGTAGTCAGTACGATCTCGTGATCCTCGACCGCATGT
TACCCCAGCTCGATGGCTTGAAATTATTGGCCGCCTTAAGGGCAACGGGCAATCAAACCCCAGTGCTGATTTTATCTGCC
TTAGCGCACGTTGATGAGCGAGTGAAAGGCTTGCGCGCGGGCGGCGACGACTATATGACTAAGCCGTTTGCCTTCTCTGA
GTTATTAGTACGCGCCGAAAAACTCATGCACCGTGGCCAATCTGTGCCAGTCACCACAGATCTTGTTGTCGGTGGCTTGA
AGATGGAATTACTGACCCGTAATGTGACGTTAGACGGGCAAGAGTTGATGCTGCAGCCGAAAGAGTTCCAGTTACTTAAG
TATCTAATGGAACATGCGAATCAAGTGATTAGCCGCACCTTGTTGTTCGAAGCGGTGTGGGATTATCACTTCGACCCACG
CACGAACGTTATCGATGTGCATATCGCAAAATTACGCCGTAAATTTGAAGAGTTAGGCCATGGCGAGCTTATCGAAACCG
TGAGGGGAGCGGGTTATCGCTTACGACAAAGGCATTAA

Protein sequence : 
MKILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGLSLATSSQYDLVILDRMLPQLDGLKLLAALRATGNQTPVLILSA
LAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMHRGQSVPVTTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLK
YLMEHANQVISRTLLFEAVWDYHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRLRQRH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-43 46
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-43 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shew185_0286 YP_001364520.1 two component transcriptional regulator BAC0083 Protein 8e-43 45
Shew185_0286 YP_001364520.1 two component transcriptional regulator BAC0347 Protein 4e-45 44
Shew185_0286 YP_001364520.1 two component transcriptional regulator BAC0197 Protein 9e-40 43
Shew185_0286 YP_001364520.1 two component transcriptional regulator BAC0111 Protein 1e-47 43
Shew185_0286 YP_001364520.1 two component transcriptional regulator BAC0638 Protein 1e-38 43
Shew185_0286 YP_001364520.1 two component transcriptional regulator BAC0308 Protein 3e-43 42
Shew185_0286 YP_001364520.1 two component transcriptional regulator BAC0125 Protein 1e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shew185_0286 YP_001364520.1 two component transcriptional regulator VFG0596 Protein 4e-44 46
Shew185_0286 YP_001364520.1 two component transcriptional regulator VFG1389 Protein 2e-36 43