|
Name : Shew185_0151 (Shew185_0151) Accession : YP_001364385.1 Strain : Shewanella baltica OS185 Genome accession: NC_009665 Putative virulence/resistance : Virulence Product : general secretion pathway protein F Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 181663 - 182886 bp Length : 1224 bp Strand : + Note : TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: sbl:Sbal_4204 general secretion pathway protein F DNA sequence : ATGCCAGCATTTGAATATAAGGCACTGGATGCCAAGGGAAAGCAGCTTAAGGGCGTAATCGAGGCGGATACCGCCAGACA CGCCCGCAGCCAGTTGCGCGATCAGCGCATGATGCCCTTGGAAATTCTGCCTGTTTCCGAAAAAGAAGCCAAAGCTAAGA GCAGCAGCTTTTCGTTTTTCAAACGGGGTATCTCGGTCGCTGAATTAGCCTTGATCACCCGCCAAATCGCGACCTTAGTG GCCGCGGGTTTACCGATTGAAGAATCCCTTAAAGCCGTTGGTCAGCAATGCGAGAAAGATCGCCTTGCGAGTATGATCAT GGCGGTACGTTCGCGGGTGGTTGAAGGTTACAGTCTGGCCGATTCCTTGGCTGAATTTCCGCACATTTTCGATGATTTAT ACCGTGCCATGGTGGCCTCGGGTGAAAAGTCCGGTCATTTAGAAGTGGTGCTCAATCGGCTGGCGGATTATACAGAGCGA CGCCAACAGCTTAAATCTAAGTTGACGCAAGCCATGATTTATCCTGCGGTATTGACCACAGTGGCGATTGGGGTAATTTC CATCCTGTTGGCGGCGGTTGTACCTAAGGTGGTCGGGCAGTTTGAACACATGGGCGCCGAGTTACCGGCTTCGACACGCT TCTTGATTTCGGCCTCTGACTTTGTCCAAAACTACGGTGTGTTTGTGGTCATTGCCCTAGTGATGCTGTTCGCGCTCTTT CGGCGCATGTTAAAGTCGCCTGCGTTTCGAATGAAGTACGACAATTTTTTATTGAGCATGCCAGTTGTTGGCCGCGTGAG TAAGGGCTTAAATACGGCGCGTTTTGCACGGACCTTAAGTATCTTATCCGCAAGCTCTGTGCCTTTGCTCGACGGTATGC GTATCGCCAGTGAAGTATTGCAGAATGTGCGAGTACGGGCCGCAGTGGATGATGCGACTGCGCGGGTGCGTGAAGGAACT AGCTTAGGTGCGGCATTGACTAATACTAAGTTGTTTCCGGCAATGATGTTATACATGATTGCCTCGGGCGAAAAGAGTGG CCAGCTTGAGCAAATGTTAGAACGCGCCGCCGATAACCAAGACAGGGAATTCGAGGGCAACGTCAATATAGCGTTAGGGG TATTTGAACCTATGCTGGTGGTGAGTATGGCGTGTGTGGTGCTGTTTATCGTGATGGCGATTCTGCAGCCAATCTTAGCC TTGAATAACTTGATTAGCGGTTAA Protein sequence : MPAFEYKALDAKGKQLKGVIEADTARHARSQLRDQRMMPLEILPVSEKEAKAKSSSFSFFKRGISVAELALITRQIATLV AAGLPIEESLKAVGQQCEKDRLASMIMAVRSRVVEGYSLADSLAEFPHIFDDLYRAMVASGEKSGHLEVVLNRLADYTER RQQLKSKLTQAMIYPAVLTTVAIGVISILLAAVVPKVVGQFEHMGAELPASTRFLISASDFVQNYGVFVVIALVMLFALF RRMLKSPAFRMKYDNFLLSMPVVGRVSKGLNTARFARTLSILSASSVPLLDGMRIASEVLQNVRVRAAVDDATARVREGT SLGAALTNTKLFPAMMLYMIASGEKSGQLEQMLERAADNQDREFEGNVNIALGVFEPMLVVSMACVVLFIVMAILQPILA LNNLISG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 5e-98 | 57 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-97 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Shew185_0151 | YP_001364385.1 | general secretion pathway protein F | VFG2049 | Protein | 6e-95 | 56 |
| Shew185_0151 | YP_001364385.1 | general secretion pathway protein F | VFG0181 | Protein | 2e-87 | 49 |
| Shew185_0151 | YP_001364385.1 | general secretion pathway protein F | VFG1870 | Protein | 1e-80 | 43 |
