Gene Information

Name : Krad_1239 (Krad_1239)
Accession : YP_001360991.1
Strain : Kineococcus radiotolerans SRS30216
Genome accession: NC_009664
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 1004738 - 1005616 bp
Length : 879 bp
Strand : +
Note : PFAM: ABC transporter; SMART: AAA ATPase; KEGG: tfu:Tfu_0336 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components

DNA sequence : 
GTGACGAAGACGACGCCCCGCCTGCGGGGCGAGGACCTCACCCTCGCCTACGACGAGCGCACCATCGCCCGCGACCTCGA
CCTCGAGATCCCGGACGGCTCCTTCACCGTCATCGTCGGCCCGAACGCCTGCGGCAAGTCGACGGTGCTGCGGGCGCTGG
CGCGGATGCTGAAGCCCACGGCGGGCCGCGTCCTGCTGGACGGGCAGCACATCCACTCCCTGCCCAGCAAGGAGGTCGCC
CGGCGGCTGGGGCTGCTGCCGCAGACGGCCACCGCCCCCGACGGCATCACCGTCGCCGACCTCGTCGCCCGCGGCCGCTT
CCCGCACCAGAAGCTGCTGCGGCAGTGGTCCCGGGACGACGAGCGGGCCGTGGACGCCGCGATGGCCTCGACCCGGGTGA
GCGAGCTCGCCGACCGCGCCGTGGACGAGCTGTCCGGCGGTCAGCGCCAGCGCGTCTGGATCGCCATGGCGCTGGCGCAG
GAGACGCCGATCCTGCTGCTGGACGAGCCGACGACGTACCTGGACATCGCCCACCAGATCGAGGTCCTCAACCTGTGCGC
TCAGCTGCACGAGGAGCAGGACCGGACGATGGTGGCCGTCCTGCACGACCTGAACCACGCCACCCGCTACGCGACGCACC
TGGTGGCCCTCAAGGAGGGCCGGGTCGTGGCCCAGGGCGACCCGGGCGAGATCGTCACCGCCCGGCTCGTGGAGGAGGTC
TTCGGCCTGCCCTGCGTCGTGGTCCCCGACCCCGAGACGGGCACGCCGCTGGTGGTGCCCCGCGCGCGCACCAGCCGGCT
CGGGCGCGACTCCGCCCACCCCGCCGTCCACGCCGCCGCCCACGCCCCCGCCGCCCGGCCGGCCGGTGGGGCGGCCTGA

Protein sequence : 
MTKTTPRLRGEDLTLAYDERTIARDLDLEIPDGSFTVIVGPNACGKSTVLRALARMLKPTAGRVLLDGQHIHSLPSKEVA
RRLGLLPQTATAPDGITVADLVARGRFPHQKLLRQWSRDDERAVDAAMASTRVSELADRAVDELSGGQRQRVWIAMALAQ
ETPILLLDEPTTYLDIAHQIEVLNLCAQLHEEQDRTMVAVLHDLNHATRYATHLVALKEGRVVAQGDPGEIVTARLVEEV
FGLPCVVVPDPETGTPLVVPRARTSRLGRDSAHPAVHAAAHAPAARPAGGAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-68 52
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 4e-68 52
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 4e-68 52
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-68 52
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-65 50
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 1e-55 48
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-64 47
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-64 47
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 5e-53 44
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-51 41
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-51 41
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-51 41
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-51 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Krad_1239 YP_001360991.1 ABC transporter BAC0164 Protein 6e-56 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Krad_1239 YP_001360991.1 ABC transporter VFG0925 Protein 3e-82 61
Krad_1239 YP_001360991.1 ABC transporter VFG1042 Protein 6e-56 48