Gene Information

Name : kdsB (NIS_0993)
Accession : YP_001356460.1
Strain : Nitratiruptor sp. SB155-2
Genome accession: NC_009662
Putative virulence/resistance : Virulence
Product : 3-deoxy-D-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1212
EC number : 2.7.7.38
Position : 1009298 - 1010014 bp
Length : 717 bp
Strand : +
Note : -

DNA sequence :
ATGATTATCATTCCGGCAAGACTTGCTTCAACAAGATTTCCTCGCAAAGTCCTCCACCCTATCAATGGCATACCTATGAT
TATTCATACAGCACAGCGTGCTTCGCAAGTGGATGAAGTTGTTATAGCAACAGACAGTGAAGAGGTTATGAAAATTGCCA
AGCAGTATGGGTTTGATGCTGTTTTGACAAGTAAGACGCATGAGAGTGGAACCGATAGGGTCAATGAAGCGGCAACTCTT
TTAGGCCTTGATGCAAAAGAGATCATCATAAACGTCCAAGCAGATGAGCCTTTGATTGAACCGCAAGTTATTAAAAAAGT
GAAAGAACTTACTATAAAACATACAAAATCATGCGAAATTATGCTTTGCAGTGCGTATAAAAAAATATCTTTCGATGCAA
CCAATGATCCCAACAGTGTCAAAGTGGTTCTTGATGCAAGCGATAAAGCACTCTATTTTTCAAGAAGCCAAATTCCTTAT
CCGCGAAGCGATGTCAAAACCATAAATATTCATCTTGGAATCTATGGATATACAAAAGAGATGCTGCAAAAATTTTGTAC
CCTACCCACTGCTCCATTGGAACAGATTGAAAAACTGGAACAACTCAGAGCATTGTATCACGGATACCGCATAGCTATGG
TTGAGGTAACTTCGCAAAGTATCGGTATCGATACGCCAGAAGATCTCAAAAAGATCAACGCATCTTTTTTCGAATAA

Protein sequence :
MIIIPARLASTRFPRKVLHPINGIPMIIHTAQRASQVDEVVIATDSEEVMKIAKQYGFDAVLTSKTHESGTDRVNEAATL
LGLDAKEIIINVQADEPLIEPQVIKKVKELTIKHTKSCEIMLCSAYKKISFDATNDPNSVKVVLDASDKALYFSRSQIPY
PRSDVKTINIHLGIYGYTKEMLQKFCTLPTAPLEQIEKLEQLRALYHGYRIAMVEVTSQSIGIDTPEDLKKINASFFE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 1e-33 42
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 1e-33 42
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 4e-33 41