Gene Information

Name : intC (mma_0883)
Accession : YP_001352573.1
Strain : Janthinobacterium sp. Marseille
Genome accession: NC_009659
Putative virulence/resistance : Unknown
Product : prophage integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1004153 - 1005397 bp
Length : 1245 bp
Strand : +
Note : -

DNA sequence : 
ATGCCAAAACTCGCCACCCCTTTAACCGATTTGCGTATCAAAGCTGCAAAACCAAAGGAAAAACCGTACCAGTTAGCTGA
CGGGGAGGGAATGTATCTGGAAATACTGCCTTCCGGGTCCAAGGTTTGGCGCATGGCATATCGTCAGGAAAACAGAACGA
CTAGCACTCGTTTGACCTTCGGGCATTACCCCGCTGTTGGTCTTGCAGAGGCCAGACGCAAACGCGCGGATACAAAGAAA
CAGATTGTAGAAGGAGTGGATCCAGCGCAAGCGCGTCGAGTCGAGAAAGCGATATCGGCAACCGCTGCAGCGAACACATT
CGAGGCCGTTGCAAGAATGTGGCACCAAAACAAGCTTGAGCAATGGCAGCCTAGAACTGCTAACAATATTCTTCGCCGAC
TTGAACAGGATGTATTTCCTCTCATTGGAAAGCGACCCATCGCAGAAGTTAAGGCTCCCGTAATGCTGGATGTTTTGAGG
CAGATTGAGAAACGTGGCGCGGCAGAGATAGCTAGACGAAATGCACAGGTTTGCAGCCAAATTTTCAGGTATGCCATTGC
TTGCGGCATCGCTGAAAATGATCCAGTTCCCGCTCTACGAGGGGCACTCAAGCCTCGAATCAAAGGCGTTCATGCAGCCA
TCTTGGTCGCAGAACTCCCAGAGTTTCTTGAAACGCTTAATCACAACAAAGCCAGAATGTTCCCGGTGACGCGCATTCTC
ATGCAGTTGATGATGCTGACCTTTGTCAGAACATCAGAGCTGACGGAAACGCCTTGGTCTGAAGTTGACCTGAAAAACGA
ACAGTGGGTGATTCCATGGCAGCGCATGAAAATGGGCAAGCGAAAGATCAATCCACGTAAAGTAGATCACCATGTGTTTC
TGCCGAAGCAAGGATGGGCTTTTCTAAGAGAGCTGCGTACCTATACTGGTGGAAATCAATGGCTTTTCCCGAATCAACGT
GATCCTAAAAAACCGATCAGCAATGGTGCAATTCTTGCGGCTCTCAAACGACTCGGTTATGCCGGCAAGCATACTGGTCA
TGGTTTCCGTTCACTCGCTAAAGGCATCTTAAAAACGTTAGGAAACGATATAAGTAATATCGAACGTCAACTAGCGCATT
CGTCAGGAGAGGCCTATGGCGCTTCGTATGACAGGGAATCTTTTTTGGAGGAACGTAAGATCATGATGCAGGGATATGCA
GATTACATTGATGCCGTAAGTAGAAAAATAGGCGACAGTAATTAA

Protein sequence : 
MPKLATPLTDLRIKAAKPKEKPYQLADGEGMYLEILPSGSKVWRMAYRQENRTTSTRLTFGHYPAVGLAEARRKRADTKK
QIVEGVDPAQARRVEKAISATAAANTFEAVARMWHQNKLEQWQPRTANNILRRLEQDVFPLIGKRPIAEVKAPVMLDVLR
QIEKRGAAEIARRNAQVCSQIFRYAIACGIAENDPVPALRGALKPRIKGVHAAILVAELPEFLETLNHNKARMFPVTRIL
MQLMMLTFVRTSELTETPWSEVDLKNEQWVIPWQRMKMGKRKINPRKVDHHVFLPKQGWAFLRELRTYTGGNQWLFPNQR
DPKKPISNGAILAALKRLGYAGKHTGHGFRSLAKGILKTLGNDISNIERQLAHSSGEAYGASYDRESFLEERKIMMQGYA
DYIDAVSRKIGDSN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int AAD44730.1 Int Not tested SHI-2 Protein 4e-70 43
int CAC39282.1 integrase Not tested LPA Protein 1e-70 43
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-70 43
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 7e-70 43
ECs4534 NP_312561.1 integrase Not tested LEE Protein 7e-70 43
int AAC31482.1 CP4-like integrase Not tested LEE Protein 5e-70 43
int ACU09430.1 integrase Not tested LEE Protein 5e-70 43
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 4e-69 42
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 4e-69 42
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 3e-69 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
intC YP_001352573.1 prophage integrase VFG0783 Protein 3e-70 43
intC YP_001352573.1 prophage integrase VFG0598 Protein 2e-69 42