Gene Information

Name : pilR (mma_2981)
Accession : YP_001354671.1
Strain : Janthinobacterium sp. Marseille
Genome accession: NC_009659
Putative virulence/resistance : Virulence
Product : two-components system response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 3343081 - 3344496 bp
Length : 1416 bp
Strand : -
Note : -

DNA sequence : 
ATGACTTCTCCTCGTATTCTTATCGTTGATGACGAGGCGGATCTGCGCGAGTTGCTGGAAATTACACTCGTCAAAATGGG
CCTGGATATCGACAGTGCGCAAAACCTGGCGGTCGCCCGCGACTATCTGCAGCAGCATGAATATGCACTGGTCTTGACCG
ATATGCGTTTGCCGGATGGTTTGGGCATAGAGCTGGTGCAGGAAATTACCGCACAATACAAAAATACCCCGGTCGCCGTG
ATCACCGCTTTTGGCAGTGCCGATAATGCAGTGGTCGCCCTGAAAGCCGGTGCTTTTGATTATTTGTCGAAGCCGGTGGG
GCTGGAGCAGTTGCGCGTCATGGTGCGTTCGGCTTTGCGCATTAGCCAGGCCGATGAACAACCGAGTGCCAAAGTGGCAG
TGTCGCCGGCCTTGCGCCTGATGGGGCAGTCGGAAGCGATGCTGGCCTTGCGCGCACAGATTGCCCGCCTGGCACGCAGC
ATGGCACCGGTCGCCATCAGCGGCGAATCCGGCAGCGGCAAGGAATTGGCCGCACGCGATATCCATGCGCAGAGTGCGCG
CAGCGACAAACCGTTTGTTGCGGTCAATTGCGGTGCGATTCCGGAAGCGCTGATGGAAGCCGAGTTCTTTGGTTACCGTA
AAGGTGCGTTTACCGGTGCGGTCGATGACCGGGATGGATTCTTCCAGGCCGCCAATGGCGGCACCCTGCTGCTGGACGAG
GTGGCGGACTTGCCGCTGGCGATGCAAGTCAAACTGCTGCGCGCGATCCAGGAGCGCCGGGTGCGTAAAGTGGGGGCGAC
GACGGAAGAGCCGGTCGATGTACGTATTATTAGTGCGACGCATCAAAACCTGCACGATTGCGTAGGGCGCGGTACCTTCC
GCCAGGATTTGTATTACCGCTTGAATGTGATCGAACTGAATTTGCCGCCTTTGCGCGAACGTCTCGATGATATTGCCTTG
CTCGCCAAAGCTATCCTGACCCGTCTCGATGCCGGGCAGGCAAGATTGACGCCGGCGGCGCTGGAAGCCTTGCTGCAGTA
CTCCTTCCCCGGCAATGTGCGGGAACTGGAAAATATACTGGAACGTGCGCTGGCCTTTGCCAACGATGGCGTGATCGAGG
TGAGCGACCTGGTATTGAAAGCCGCGCACACGCCGAAAGCGGTTGCGGCAGAGATGGTCGAAGCGCTTGCAGTGCCCGAG
CAAGCAATGGTCGCGCCGGATGCCAAACCGCTGGCAGCCACCAGCGATTTGCCTGGCTCCTTGCCGGATCACCTGGATGA
TGTGGAGCGCGAAATCATCCGTCGCGCCCTGAGCAAGACCCAGTTCAACCGGACCCAGGCTGCCGAATTGCTCGGCATCA
GTTTCCGCCAGCTGCGTTATCGCATGCAGCGGCTGGATATCAATGCACCGGAATAA

Protein sequence : 
MTSPRILIVDDEADLRELLEITLVKMGLDIDSAQNLAVARDYLQQHEYALVLTDMRLPDGLGIELVQEITAQYKNTPVAV
ITAFGSADNAVVALKAGAFDYLSKPVGLEQLRVMVRSALRISQADEQPSAKVAVSPALRLMGQSEAMLALRAQIARLARS
MAPVAISGESGSGKELAARDIHAQSARSDKPFVAVNCGAIPEALMEAEFFGYRKGAFTGAVDDRDGFFQAANGGTLLLDE
VADLPLAMQVKLLRAIQERRVRKVGATTEEPVDVRIISATHQNLHDCVGRGTFRQDLYYRLNVIELNLPPLRERLDDIAL
LAKAILTRLDAGQARLTPAALEALLQYSFPGNVRELENILERALAFANDGVIEVSDLVLKAAHTPKAVAAEMVEALAVPE
QAMVAPDAKPLAATSDLPGSLPDHLDDVEREIIRRALSKTQFNRTQAAELLGISFRQLRYRMQRLDINAPE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-84 45
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-84 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_001354671.1 two-components system response regulator BAC0467 Protein 1e-64 42
pilR YP_001354671.1 two-components system response regulator BAC0089 Protein 2e-61 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_001354671.1 two-components system response regulator VFG1214 Protein 1e-102 55
pilR YP_001354671.1 two-components system response regulator VFG0116 Protein 3e-50 41