Gene Information

Name : pchD (PSPA7_0872)
Accession : YP_001346258.1
Strain : Pseudomonas aeruginosa PA7
Genome accession: NC_009656
Putative virulence/resistance : Virulence
Product : pyochelin biosynthesis protein PchD
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG1021
EC number : -
Position : 856747 - 858390 bp
Length : 1644 bp
Strand : -
Note : Annotation generated by automatically transferring the annotation from the manually curated GenBank accession AE004091; identified by match to protein family HMM PF00501

DNA sequence : 
ATGACTTCCTCGCCCGTCCCTCGAACGGCCGTCGACGACGCCCCCGACTGGCCCGCCGACTTCGCTCGCCGCTACATCGC
CGCTGGCCACTGGCAGCAGCAGAGCTTCGCCGAAGCCCTCGCCGCCAGCGCCGCGCGCCATCCGCAACGGATCGCGCTGT
GCGCCGACCAGCAGCGCCTCAGCTACGCCGAGCTGCTGCTGCGCTGTCGCCGCCTGGCTGCCGGCCTGCGCCAGCTCGGT
CTGGCGCGCGGCGACACGGTGGTGCTGCACCTGCCCAACGGAATCGCCTTCGTCGAGACCTGCTTCGCCCTGTTCCAGCT
CGGCGTGTGCCCGGTACTGGCCCTGCCCGCACACCGCCAGCACGAGATCGGCGGCTTCTGCCGCTTCGCCGGGGCCAAGG
CCTATATCGGCGCCGAGCGGATCGATGGTTTCGACCCGCGGCCGATGGCCGGCGAACTGCTCGCCAGCGGCGCCTGTCGC
ATGGCGCTGATCCACGGCGAGGCCGAGGCTCCGCTGCAAACGCTGGCACCGCTGTACCAGGCGCCGGCGCTGGAGGAATG
CGCCGCCCGCGCCGAGGACGTCGCCTGCTTCCAGCTGTCCGGCGGCACCACCGGCACGCCGAAGCTGATTCCCCGGCGTC
ACCGCGAATACCTCTACAACGTGCGCGCCAGCACCGAGGTCTGCGGCTTCGACGAGCACACCGTGTACCTTACCGGCCTG
CCGATGGCGCACAATTTCACCCTCTGCTGCCCCGGGGTGATCGGCACCCTGCTGGCCGGCGGTCGCGTGGTGGTCAGCCA
GCGCGCCGATCCCGAGCACTGCTTCCCGCTGATCGCCCGCGAACGGGTCACCCACACCGCCCTGGTGCCACCGCTGGCGA
TGCTCTGGCTGGATGCCCAGGAAAGCCGCCGCGCCGATCTATCCAGCCTGCGCCTGCTCCAGGTCGGCGGCTCGAAGCTC
GGCAGCAGTGCCGCGCGGCGCGTCGAACCGGTGCTTGGCTGCCGGCTGCAACAGGTGCTGGGAATGGCCGAGGGGCTGAT
CTGCTATACCCGCCTGGACGATCCGCCCGAACGCGTCCTGCACACCCAGGGCCGGCCGCTGTCGCCGGACGACGAGGTGC
GGGTGGTCGATGCTGACGGCCGCGAGGTCGGCCCCGGCGAGATCGGCGAGCTGACCGTGCGCGGCCCCTACACCATCCGC
GGCTACTACCGGCTACCCGAGCACAACGCCAAGGCCTTCAGCGCGGACGGTTTCTACCGCACCGGCGACCGGGTCAGCCG
CGACGCCGACGGCTACCTGGTGGTGGAAGGCCGCGACAAGGACCAGATCAACCGCGGCGGCGAGAAGATCGCCGCGGAGG
AAGTGGAGAACCTGCTGATCGCCCATCCGCAGGTGCACGACGCCACCGTGGTGGCGATGCCCGACAGCCTGCTCGGCGAA
CGCACCTGCGCTTTCGTCATCCCGCGCCAGCCGGCGCCCTCGGCGCTGAAGCTGAAGCAGTACCTGCACGCCTGCGGACT
GGCCGCGTTCAAGGTGCCGGACCGCATCGAGCTGGTCGCGGCCTTCCCCCAGACCGGGATCGGCAAGATCAGCAAGAAGG
ACCTGCGCGAGCGCCTGCGCCGCGAGCTGGAGGCCCGCGCATGA

Protein sequence : 
MTSSPVPRTAVDDAPDWPADFARRYIAAGHWQQQSFAEALAASAARHPQRIALCADQQRLSYAELLLRCRRLAAGLRQLG
LARGDTVVLHLPNGIAFVETCFALFQLGVCPVLALPAHRQHEIGGFCRFAGAKAYIGAERIDGFDPRPMAGELLASGACR
MALIHGEAEAPLQTLAPLYQAPALEECAARAEDVACFQLSGGTTGTPKLIPRRHREYLYNVRASTEVCGFDEHTVYLTGL
PMAHNFTLCCPGVIGTLLAGGRVVVSQRADPEHCFPLIARERVTHTALVPPLAMLWLDAQESRRADLSSLRLLQVGGSKL
GSSAARRVEPVLGCRLQQVLGMAEGLICYTRLDDPPERVLHTQGRPLSPDDEVRVVDADGREVGPGEIGELTVRGPYTIR
GYYRLPEHNAKAFSADGFYRTGDRVSRDADGYLVVEGRDKDQINRGGEKIAAEEVENLLIAHPQVHDATVVAMPDSLLGE
RTCAFVIPRQPAPSALKLKQYLHACGLAAFKVPDRIELVAAFPQTGIGKISKKDLRERLRRELEARA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ybtE YP_853079.1 yersiniabactin siderophore biosynthetic protein Virulence PAI IV APEC-O1 Protein 3e-103 51
irp5 YP_002346898.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 3e-103 51
ybtE NP_669710.1 salicyl-AMP ligase Virulence HPI Protein 3e-103 51
ybtE NP_993003.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 3e-103 51
ybtE YP_070120.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 3e-103 51
ybtE CAA21394.1 - Virulence HPI Protein 3e-103 51
irp5 CAA73130.1 Irp5 protein Virulence HPI Protein 2e-102 51
ybtE AAA93464.1 yersiniabactin 2,3-dihydoxybenzoate-AMP ligase Virulence HPI Protein 2e-103 51
irp5 YP_001006819.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 3e-102 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pchD YP_001346258.1 pyochelin biosynthesis protein PchD VFG0168 Protein 0.0 94
pchD YP_001346258.1 pyochelin biosynthesis protein PchD VFG1817 Protein 1e-87 46
pchD YP_001346258.1 pyochelin biosynthesis protein PchD VFG0932 Protein 1e-102 45