Gene Information

Name : PSPA7_6316 (PSPA7_6316)
Accession : YP_001351627.1
Strain : Pseudomonas aeruginosa PA7
Genome accession: NC_009656
Putative virulence/resistance : Resistance
Product : beta-lactamase PSE-2
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG2602
EC number : 3.5.2.6
Position : 6533247 - 6534035 bp
Length : 789 bp
Strand : +
Note : Annotation was generated automatically without manual curation; identified by match to protein family HMM PF00905

DNA sequence :
ATGCGCCTTCTCTTCTTCAGCGCCCTTCTCCTGCTCTTCGGACAGGCCCAGGCCAGCGAATGGAACGACAGCCAGGCAGT
GGGCAAGCTATTCGAAGCCGCCGGGATGAAAGGTACCTTCGTTCTCTACGACGTGCAGCGGCAGGGTTATGACGGCCACG
ACCGAGCACGCGCGCAGACCCGCTTCGTCCCTGCCTCCACCTATAAGGTGGCGCACAGCCTGATCGGTTTATCCACAGGC
GCGGTGAAGTCCGCCGACGAGGTCCTGCCCTATGGCGGCAAGCCCCAGCGCTTCAAGGCCTGGGAGCATGACATGAGCCT
GCGCGAGGCGATCCGTGCATCCAACGTGCCGGTCTACCAGGAACTGGCGCGGCGCATCGGCCTGCAGCGTATGCGCGCCA
ACCTCGCCCGCATGGACTATGGAAATGGCGAGGTCGGGCAGGTTGTGGACAACTTCTGGCTGGTGGGGCCACTGGAGATC
AGCGCGCTGGAGCAGACCCGTTTCCTCGCCCGGCTGGCACAGGGAGAACTGCCGTTTCCCGAGCAGGTGCAGGCCACCGT
GCGCGACATGACCCTGATGGAACACGGCCCGGACTGGGAGCTGCACGGCAAGACCGGCTGGTGTTTCGATTGCACGCCGG
AACTCGGCTGGTGGGTCGGCTGGGTGAAGCGCGACGAGCGCCTTTACACCTTCGCCCTGAACATCGACATGCCCGGCGGC
GAGGCCGACATCGGCAAGCGCCTCGAACTGGGCAAGGCCGCTCTCAAGGCCTTGGGCGTGCTGCCCTAG

Protein sequence :
MRLLFFSALLLLFGQAQASEWNDSQAVGKLFEAAGMKGTFVLYDVQRQGYDGHDRARAQTRFVPASTYKVAHSLIGLSTG
AVKSADEVLPYGGKPQRFKAWEHDMSLREAIRASNVPVYQELARRIGLQRMRANLARMDYGNGEVGQVVDNFWLVGPLEI
SALEQTRFLARLAQGELPFPEQVQATVRDMTLMEHGPDWELHGKTGWCFDCTPELGWWVGWVKRDERLYTFALNIDMPGG
EADIGKRLELGKAALKALGVLP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
oxa23 AEZ06035.1 OXA-23 class D beta-lactamase Not tested Tn6167 Protein 2e-43 42
BJAB0715_00989 YP_008216137.1 Beta-lactamase class D Not tested AbaR27 Protein 7e-44 42
oxa23 AEO37447.1 class D beta-lactamase OXA-23 Not tested AbaR4 Protein 7e-44 42
oxa-23 AFV47968.1 class D beta-lactamase OXA-23 Not tested AbaR25 Protein 5e-44 42
oxa-23 AFV47996.1 class D beta-lactamase OXA-23 Not tested delta-AbaR25 Protein 5e-44 42
bla(Oxa-23) AFH57213.1 carbapenemase Not tested AbaR4b Protein 6e-44 42
blaOXA-129 AET25386.1 OXA-129 beta-lactamase Not tested PAGI-2(C) Protein 2e-41 41
bla OXA-129 AFG30109.1 OXA-129 beta-lactamase Not tested PAGI-2 Protein 2e-41 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 AY306130.1.gene1.p01 Protein 3e-95 87
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 AY423074.1.gene1.p01 Protein 3e-46 47
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 EU086834.1.gene1.p01 Protein 6e-50 45
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 EU086830.1.gene1.p01 Protein 8e-50 45
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 JF273470.1.gene1.p01 Protein 3e-50 45
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 DQ519090.1.gene1.p01 Protein 2e-42 45
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 NC_010481.6155789.p0 Protein 1e-42 45
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 EF102240.1.gene13.p0 Protein 2e-42 45
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 AY665723.gene.p01 Protein 1e-42 45
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 HQ122933.1.gene1.p01 Protein 6e-42 44
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 GU831575.1.gene1.p01 Protein 9e-42 44
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 AY619003.1.gene1.p01 Protein 2e-46 43
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 AY288523.1.gene1.p01 Protein 4e-43 42
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 FJ194494.1.gene1.p01 Protein 6e-43 42
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 HM488990.1.gene1.p1 Protein 5e-44 42
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 HM488987.1.gene1.p1 Protein 3e-44 42
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 HM488991.1.gene1.p1 Protein 4e-44 42
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 AY795964.gene.p01 Protein 3e-44 42
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 HM488989.1.gene1.p1 Protein 3e-44 42
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 AF201828.gene.p01 Protein 5e-44 42
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 HM488988.1.gene1.p1 Protein 3e-44 42
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 AY762325.1.gene1.p01 Protein 4e-44 42
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 HM488992.1.gene1.p1 Protein 4e-44 42
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 NC_011586.7044972.p0 Protein 3e-44 42
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 JN638887.1.gene1.p01 Protein 9e-44 42
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 HM488986.1.gene1.p1 Protein 3e-44 42
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 AY750909.1.gene1.p01 Protein 4e-40 42
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 HM113558.1.gene1.p01 Protein 4e-41 42
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 HQ734813.1.gene1.p01 Protein 7e-40 42
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 HM113559.1.gene1.p01 Protein 3e-40 42
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 EU547446.1.gene1.p1 Protein 1e-39 42
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 EU019534.1.gene1.p01 Protein 2e-40 42
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 DQ309277.1.gene1.p01 Protein 7e-40 42
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 DQ519089.1.gene1.p01 Protein 4e-40 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 AY750908.1.gene1.p01 Protein 3e-40 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 EF650034.1.gene1.p01 Protein 1e-39 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 AY750912.1.gene1.p01 Protein 1e-39 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 HM570036.1.gene1.p01 Protein 5e-40 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 AM231719.1.gene1.p01 Protein 3e-40 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 HQ734811.1.gene1.p01 Protein 4e-40 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 DQ392963.1.gene1.p01 Protein 3e-40 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 GQ853679.1.gene1.p1 Protein 4e-40 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 EF650037.1.gene1.p01 Protein 3e-39 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 EF650032.1.gene1.p01 Protein 7e-40 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 EF581285.1.gene1.p01 Protein 3e-40 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 AY750907.1.gene1.p01 Protein 2e-39 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 DQ519088.1.gene1.p01 Protein 3e-40 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 AY750913.1.gene1.p01 Protein 2e-39 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 EU547445.1.gene1.p1 Protein 4e-40 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 AM932669.1.gene2.p01 Protein 1e-41 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 HM113564.1.gene1.p01 Protein 7e-39 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 HQ425494.1.gene1.p01 Protein 3e-40 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 HQ425492.1.gene1.p01 Protein 9e-40 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 HM113561.1.gene1.p01 Protein 1e-39 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 EU019535.1.gene1.p01 Protein 3e-39 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 HM113563.1.gene1.p01 Protein 8e-40 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 DQ309276.1.gene1.p01 Protein 3e-39 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 HM113562.1.gene1.p01 Protein 2e-39 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 EU029998.1.gene2.p01 Protein 9e-39 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 HM113560.1.gene1.p01 Protein 9e-40 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 EF650035.1.gene1.p01 Protein 2e-39 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 HQ734812.1.gene1.p01 Protein 4e-39 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 EU019536.1.gene1.p01 Protein 9e-40 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 AB634250.1.gene1.p01 Protein 1e-39 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 HQ425493.1.gene1.p01 Protein 1e-38 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 HQ425495.1.gene1.p01 Protein 1e-39 41
PSPA7_6316 YP_001351627.1 beta-lactamase PSE-2 AY343493.1.gene1.p01 Protein 5e-37 41