|
Name : pilB (PSPA7_5162) Accession : YP_001350497.1 Strain : Pseudomonas aeruginosa PA7 Genome accession: NC_009656 Putative virulence/resistance : Virulence Product : type 4 fimbrial biogenesis protein PilB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 5309526 - 5311211 bp Length : 1686 bp Strand : + Note : Annotation was generated automatically without manual curation; identified by match to protein family HMM PF00437; match to protein family HMM PF05157; match to protein family HMM TIGR02538 DNA sequence : TTGACCGGACTGGCCAGGCAACTGGTTCTCTCCAATCTTCTGGATGAAAATGCCGCCCAGCAGGCCCATTTGCAAGCCCA GCGCAGCAAGCTGCCCCTGGTCACCTATCTGGTACAGAACAAGCTGGTCAAGAGTCGCGATTTGCTGGAACTGACAGCTG AACAGTTCGGCATCGCTTACGTAGATCTTGGTGCTCTGGACAAGGAGAGTTTCCCCAAGGATCTGATCAGCGAAAAACTC TCTCGACAGCACCGAGTCGTTCCACTGTGGCGACGCGGCAACAAACTGTTCATCGGTCTCTCCGACCCCGCCAACCACCA GGCGGTGTCTGACATTCAGTTCAGCACCGGGCTGACCACGGAAGCGATCCTGGTCGAAGACGACAAGCTGACGCAGACCA TCGACAAGCTTTATGAAAATGCCACCGACAGCCTGGCTGGCCTGGACGATGTCGATCTCGACGGCCTGGATGTATCCACC GGCGACAGTTCGCCCCAGGAGGACGGTTCGGGCGGAGACGCCGACGACGCACCGGTAGTGCGCTTCGTCAACAAGATGTT GCTGGACGCCATCAAGGGCGGCTCTTCCGACCTGCACTTCGAACCCTACGAGAAGATCTACCGGGTGCGCTTCCGTACCG ACGGCATGCTCCACGAAGTGGCCAAGCCGCCGATCCAGCTGGCTAGCCGTATATCTGCGCGTCTCAAGGTGATGGCCGGC CTCGACATCTCCGAACGGCGCAAGCCGCAGGACGGGCGGATCAAGATGCGCGTGTCGAAGACCAAGTCCATCGATTTCCG GGTCAACACCCTGCCGACCCTCTGGGGCGAGAAGATCGTGATGCGGATCCTCGACTCCTCCAGCGCGCAGATGGGCATCG ATGCGCTGGGCTACGAAGAGGACCAGAAGGAACTCTACCTGGCCGCGCTCAAGCAGCCGCAGGGCATGATCCTGGTCACC GGCCCCACCGGTTCGGGCAAGACGGTCTCGCTGTACACCGGCCTGAACATCCTCAATACAACCGATATCAACATCTCCAC CGCCGAAGATCCGGTGGAGATCAACCTGGAAGGCATCAACCAGGTCAACGTCAACCCGCGCCAGGGCATGGACTTCTCCC AGGCGCTGCGCGCCTTCCTGCGCCAGGATCCGGACGTGATCATGGTCGGCGAGATCCGCGACCTGGAAACCGCCGAGATC GCCATCAAGGCGGCGCAGACCGGGCACATGGTGATGTCCACCCTGCACACCAACAGCGCCGCCGAGACCCTCACCCGTCT GCTGAACATGGGCGTGCCGGCGTTCAACCTGGCGACCTCGGTGAACCTGATCATCGCCCAGCGCCTTGCGCGAAAACTCT GTTCGCATTGCAAGAAAGAACACGATGTTCCGAGGGAAACTCTGCTTCACGAGGGCTTCCCTGAAGAACTGATCGGCACC TTCAAGCTGTATTCGCCGGTGGGCTGTGAAAATTGCAAAGGCGGTTACAAAGGTCGCGTCGGTATTTATGAAGTGGTTAA AAACACCCCCGCCCTGCAGCGGATTATCATGGAGGAAGGCAACTCCATCGAGATCGCCGAGCAAGCCCGCAAAGAAGGCT TCAACGATCTGCGCTCCTCAGGCCTGCTGAAAGCCATGCAGGGAATCACCAGCCTGGAGGAAGTCAACCGCGTGACCAAG GACTAA Protein sequence : MTGLARQLVLSNLLDENAAQQAHLQAQRSKLPLVTYLVQNKLVKSRDLLELTAEQFGIAYVDLGALDKESFPKDLISEKL SRQHRVVPLWRRGNKLFIGLSDPANHQAVSDIQFSTGLTTEAILVEDDKLTQTIDKLYENATDSLAGLDDVDLDGLDVST GDSSPQEDGSGGDADDAPVVRFVNKMLLDAIKGGSSDLHFEPYEKIYRVRFRTDGMLHEVAKPPIQLASRISARLKVMAG LDISERRKPQDGRIKMRVSKTKSIDFRVNTLPTLWGEKIVMRILDSSSAQMGIDALGYEEDQKELYLAALKQPQGMILVT GPTGSGKTVSLYTGLNILNTTDINISTAEDPVEINLEGINQVNVNPRQGMDFSQALRAFLRQDPDVIMVGEIRDLETAEI AIKAAQTGHMVMSTLHTNSAAETLTRLLNMGVPAFNLATSVNLIIAQRLARKLCSHCKKEHDVPRETLLHEGFPEELIGT FKLYSPVGCENCKGGYKGRVGIYEVVKNTPALQRIIMEEGNSIEIAEQARKEGFNDLRSSGLLKAMQGITSLEEVNRVTK D |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-83 | 46 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-83 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| pilB | YP_001350497.1 | type 4 fimbrial biogenesis protein PilB | VFG0112 | Protein | 0.0 | 91 |
| pilB | YP_001350497.1 | type 4 fimbrial biogenesis protein PilB | VFG1880 | Protein | 2e-151 | 54 |
| pilB | YP_001350497.1 | type 4 fimbrial biogenesis protein PilB | VFG0233 | Protein | 8e-125 | 50 |
| pilB | YP_001350497.1 | type 4 fimbrial biogenesis protein PilB | VFG2048 | Protein | 6e-84 | 46 |
| pilB | YP_001350497.1 | type 4 fimbrial biogenesis protein PilB | VFG0182 | Protein | 2e-82 | 46 |
| pilB | YP_001350497.1 | type 4 fimbrial biogenesis protein PilB | VFG1876 | Protein | 4e-79 | 43 |
