Gene Information

Name : PSPA7_3478 (PSPA7_3478)
Accession : YP_001348838.1
Strain : Pseudomonas aeruginosa PA7
Genome accession: NC_009656
Putative virulence/resistance : Virulence
Product : putative Orn/Arg/Lys decarboxylase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG1982
EC number : -
Position : 3601478 - 3603733 bp
Length : 2256 bp
Strand : -
Note : Annotation generated by automatically transferring the annotation from the manually curated GenBank accession AE004091; identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711

DNA sequence :
ATGTATAAAGACCTCAAATTTCCCGTCCTCATCGTCCATCGCGACATCAAGGCCGACACCGTTGCCGGCGAACGCGTGCG
GGGCATCGCCCACGAGCTGGAGCAGGACGGCTTCAGCATTCTCTCCACCGCCAGTTCCGCCGAAGGACGCATCGTCGCCT
CGACCCATCACGGCCTGGCCTGCATCCTGGTCGCCGCCGAAGGCGCCGGGGAAAACCAGCGCCTGCTGCAGGATGTGGTG
GAGCTGATCCGCGTGGCCCGCGTGCGGGCGCCGCAACTGCCGATCTTCGCCCTTGGCGAGCAGGTGACCATCGAGAACGC
CCCTGCCGAGTCGATGGCCGACCTGCACCAGTTGCGCGGCATCCTCTATCTGTTCGAGGACACCGTGCCGTTCCTCGCCC
GCCAGGTCGCCCGCGCGGCGCGCAACTACCTGGCCGGCCTGCTGCCGCCGTTCTTCCGCGCGCTGGTCGAGCACACCGCG
CAGTCCAACTACTCCTGGCACACGCCGGGCCACGGCGGTGGCGTCGCCTACCGGAAGAGCCCGGTGGGACAGGCGTTCCA
CCAGTTCTTCGGGGAGAACACGCTGCGTTCGGACCTGTCGGTCTCGGTCCCCGAACTGGGCTCGCTGCTCGATCACACCG
GTCCCCTGGCCGAGGCCGAGGACCGCGCCGCGCGCAACTTCGGCGCGGACCACACGTTCTTCGTGATCAACGGCACTTCC
ACCGCGAACAAGATCGTCTGGCACTCGATGGTCGGCCGCGAGGACCTGGTGCTGGTTGATCGCAACTGCCACAAGTCGAT
CCTCCATTCGATCATCATGACCGGGGCGATCCCGCTCTACCTGACCCCGGAGCGCAACGAACTGGGCATCATCGGGCCGA
TCCCGCTGAGCGAGTTCAGCCGGGAGTCGATCGCCGCGAAAATCGCCGCCAGCCCGCTGGCGCGTGGCCGCGAACCGAAG
GTGAAGCTGGCGGTGGTGACCAACTCCACCTATGACGGCCTGTGCTACAACGCCGAGCTGATCAAGCAAACCCTCGGCGA
CAGCGTCGAGGTGCTGCACTTCGACGAGGCCTGGTACGCCTATGCGGCGTTCCACGAGTTCTACGACGGCCGCTATGGCA
TGGGCACCTCGCGCAGCGAGGCGGGCCCCCTGGTGTTCGCCACCCACTCCACGCACAAGATGCTCGCCGCCTTCAGCCAG
GCCTCGATGATCCACGTGCAGGACGGCGGCGCGCGCCAGCTGGACGTGGCGCGCTTCAACGAAGCCTTCATGATGCACAT
TTCCACCTCGCCGCAGTACGGCATCATCGCCTCGCTGGACGTGGCCTCGGCGATGATGGAGGGGCCCGCCGGGCGCTCGC
TGGTCCAGGAAACCTTCGACGAGGCCCTGAGCTTCCGCCGCGCCCTGGCCAACGCGCGACAGAACCTCGGTCGTGGCGAC
TGGTGGTTCGGCGTCTGGCAGCCGGAGCAGGTGGAGGGCACCGACCAGGTGCGCACCGGCGACTGGGTGCTGGAGCCGAG
CGCCGATTGGCACGGCTTCGGCGACATCGCCGAAGACTACGTGTTGCTCGACCCGATCAAGGTCACCCTGACCACGCCGG
GGCTGAGCGCCGGCGGCAAGCTCGGCGAGCAGGGCATTCCCGCCGCCATCGTCAGCCGTTTCCTCTGGGAGCGTGGCCTG
GTGGTGGAAAAGACCGGCCTGTATTCCTTCCTGGTGCTGTTCTCGATGGGCATCACCAAGGGCAAGTGGAGCACCCTGGT
CACCGAACTGCTCGAGTTCAAGCGTTGCTACGACGCCAACCTGCCGCTCGTCGATGTCTTGCCTTCGGTGGCCCAGGCCG
GCGGCAAGCGCTACAACGGCATGGGTCTGCGCGACCTCAGCGACGCCCTGCACGCCAGCTATCGCGACAATGCCACGGCG
AAGGCCATGAAGCGCATGTACACGGTGTTGCCGGAAGTCGCGATGCGTCCGTCCGAGGCCTACGACAAGCTGGTCCGCGG
CGAGGTCGAGGCGGTACCGATCGCCCAACTGGAAGGGCGCATCGCCGCCGTCATGCTGGTACCCTATCCGCCGGGCATCC
CGCTGATCATGCCGGGTGAGCGCTTCACCGAGGCGACCCGCTCGATCCTCGACTATCTCGAGTTCGCGCGGACCTTCGAG
CGCGCCTTCCCCGGCTTCGATTCCGATGTGCACGGCCTGCAGCATCAGGACGGACCGTCCGGGCGCTGCTATACCGTTGA
ATGCATAAAGGAATGA

Protein sequence :
MYKDLKFPVLIVHRDIKADTVAGERVRGIAHELEQDGFSILSTASSAEGRIVASTHHGLACILVAAEGAGENQRLLQDVV
ELIRVARVRAPQLPIFALGEQVTIENAPAESMADLHQLRGILYLFEDTVPFLARQVARAARNYLAGLLPPFFRALVEHTA
QSNYSWHTPGHGGGVAYRKSPVGQAFHQFFGENTLRSDLSVSVPELGSLLDHTGPLAEAEDRAARNFGADHTFFVINGTS
TANKIVWHSMVGREDLVLVDRNCHKSILHSIIMTGAIPLYLTPERNELGIIGPIPLSEFSRESIAAKIAASPLARGREPK
VKLAVVTNSTYDGLCYNAELIKQTLGDSVEVLHFDEAWYAYAAFHEFYDGRYGMGTSRSEAGPLVFATHSTHKMLAAFSQ
ASMIHVQDGGARQLDVARFNEAFMMHISTSPQYGIIASLDVASAMMEGPAGRSLVQETFDEALSFRRALANARQNLGRGD
WWFGVWQPEQVEGTDQVRTGDWVLEPSADWHGFGDIAEDYVLLDPIKVTLTTPGLSAGGKLGEQGIPAAIVSRFLWERGL
VVEKTGLYSFLVLFSMGITKGKWSTLVTELLEFKRCYDANLPLVDVLPSVAQAGGKRYNGMGLRDLSDALHASYRDNATA
KAMKRMYTVLPEVAMRPSEAYDKLVRGEVEAVPIAQLEGRIAAVMLVPYPPGIPLIMPGERFTEATRSILDYLEFARTFE
RAFPGFDSDVHGLQHQDGPSGRCYTVECIKE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66195.1 putative cadaverin decarboxylase Virulence PAI III 536 Protein 1e-134 45
cadA NP_756988.1 lysine decarboxylase, inducible Not tested PAI II CFT073 Protein 1e-130 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPA7_3478 YP_001348838.1 putative Orn/Arg/Lys decarboxylase VFG1670 Protein 6e-135 45