|
Name : Asuc_1104 (Asuc_1104) Accession : YP_001344405.1 Strain : Actinobacillus succinogenes 130Z Genome accession: NC_009655 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : - Position : 1226716 - 1228005 bp Length : 1290 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGATCGATCCGAATTTACTGCGTAATAATCTGGAAGAAACCGCACAAAAATTAAAAGAGAAGCGTAATTTTATTCTGGA TGTGAAGCAATTAAGAAAATTAGAAGAACAACGCAAAGCGCTGCAGGTTAAAACCGAAACGTTGCAGGCGGAGCGTAATT TGCGTTCCAAAGCTATCGGCGCTGCGAAAGCGCGCGGTGAAAATATCGAAAGTTTATTAAATGAAGTGGATCATTTAGGC ATTGAATTGGCGCAGGCGAAAGCGTTGTTTGACGACGTATCTGCGGAACTGAATACAATTTTATTGACGATTCCGAATAT TCCGGCGGATGAAGTACCGCAAGGCAAAGACGATACGGAAAATCAGGAAGTCGCCCGTTGGGGAACACCGAGAACTTTCG ATTTTGAAGTCAAAGATCATGTTACGTTAGGCGAAAATATCGACGGGCTGGATTTCTCCGCCGGGGTGAAATTAAGCGGT GCGCGTTTTGCCGTGATGAAAGGTCGGATCGCCAAATTACATCGCGCTTTAGCGCAGTTCATGCTGGATCTGCATACGGA AAAACACGGTTATTTGGAAACGTATGTACCTTATTTGGTAAATCACACTACGCTATACGGAACCGGACAATTGCCGAAAT TCGGTGAAGATTTGTTTCATACCAAAGCTTTGGAAGGCGAACAGCCTTACGCATTAATCCCGACGGCCGAGGTGCCGGTC ACCAATTTAGTACGCGATGAAATTCTGAGTGTGGAAAATTTACCGTTAAAAATGACCGCACATACGCCTTGTTTCCGTTC CGAAGCCGGGTCATACGGTCGCGATACCCGCGGTTTAATCCGCATGCACCAGTTTGATAAAGTGGAAATGGTGCAAATTG TGGAACCGGAAAAATCGATGGAAGCTCTGGAAGAACTGACCGGGCATGCGGAAGAAGTGTTGCGGTTGTTAAATTTGCCG TATCGTAAAGTGTTGCTTTGTAGCGGCGATATGGGATTCGGAGCCTGTAAAACCTATGACCTGGAAGTATGGCTGCCGGC ACAAAATACTTACCGTGAAATTTCTTCCTGTTCCAATATGTGGGATTTCCAGGCCCGCCGCATGCAGGCCCGTTGTCGAG CCAAAGGCGACAAAAAAACGCGCCTGGTGCATACGTTGAACGGTTCCGGTTTAGCTGTGGGTCGGACTTTGGTCGCGGTA TTGGAGAATTATCAAAATGCCGACGGTTCGATTACCGTACCGGAAGTTTTACGTCCGTATATGGACAATGTTGATACGAT CGGTCGCTAA Protein sequence : MIDPNLLRNNLEETAQKLKEKRNFILDVKQLRKLEEQRKALQVKTETLQAERNLRSKAIGAAKARGENIESLLNEVDHLG IELAQAKALFDDVSAELNTILLTIPNIPADEVPQGKDDTENQEVARWGTPRTFDFEVKDHVTLGENIDGLDFSAGVKLSG ARFAVMKGRIAKLHRALAQFMLDLHTEKHGYLETYVPYLVNHTTLYGTGQLPKFGEDLFHTKALEGEQPYALIPTAEVPV TNLVRDEILSVENLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVEPEKSMEALEELTGHAEEVLRLLNLP YRKVLLCSGDMGFGACKTYDLEVWLPAQNTYREISSCSNMWDFQARRMQARCRAKGDKKTRLVHTLNGSGLAVGRTLVAV LENYQNADGSITVPEVLRPYMDNVDTIGR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 3e-103 | 54 |
