Gene Information

Name : Mmwyl1_3116 (Mmwyl1_3116)
Accession : YP_001341961.1
Strain : Marinomonas sp. MWYL1
Genome accession: NC_009654
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 3530674 - 3531942 bp
Length : 1269 bp
Strand : -
Note : TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bbr:BB3423 putative inner membrane protein

DNA sequence :
ATGCCAACAGTCATTGTTTCGCTATTGCTTACATTCATTTCATTATCTGTGCCTATTGCCGTCGCTATTGTTATTGCGTC
AGCAGTAGGGCTTTATTTTTTCAGTAACCTCCCATTAATTATCATTCCACAGCGAATGTTTATTGGTTTAGATAGCTTTC
CATTAATGGCAGTTCCTTTATTTATTCTCGCCGGAAATATTATGGGGCAAGGAGGGGTTTCAAAACGTTTGGTAACTTTT
GCCAAATCTCTTGTGGGCAACCTTCAGGGTGGTTTAGCGATTTCTTGTGTTATAACCAGTATGATTTTTGCTGCCGTATC
TGGATCAAGTGTTGCGACAGCATATGCTGTAGGGGCGATCTTGCTTCCAGCGATGATAGCACATGGTTATCCTAAACCTA
TGGCGACGGCGATTCAGGCGTCTTCTGCGAATTTGGGAATTGTTATTCCTCCATCTGTGCCATTAATTATGTATGGTGTT
AGCACTAATACATCGATAGGTAAGCTCTTTCTTGCTGCAATAGGCCCAGGTCTGCTTATGGGTATTGCCCTTATTATCAT
GGTTATTGTTTGGTGTATTGTGACTGGACATGGCAAAAATGATGCAAATGATCAACAGAGTTTATTGGCTTCATCAAAAG
ATGCTTTACTGGCTTTGCTAATGCCTACCATGATTCTTGGTGGAATTTATGGCGGTGTTTTCACCCCAACTGAGGCTTCA
GCTATCGCTGTTATTTATGGGCTGATACTGGGCGTTTTTGTTTATAAAGAAATCTCGTTTAAAGATATACCAAGGATACT
TAAAGGCTCTGTGGTATCAACGTCTTCTGTGATGCTAATTATTGCGGCAGCTTCATTGTTAAGTTTTCTTGTGAGTCGGT
CCGATTTGCCTCAGCTACTTTCTACTTTTGCTACGGATAACTTTTCGACTAAGTTACAGTTTTTCTTAGCGGTTAATTTG
TTGCTTTTAGTTGTTGGTATGTTTGTTGAAACCTCTGCTTCGATTTTACTACTTGCACCTATATTTGCCCCCATTGCTAT
TATTTATGGTATTGATCCTGTTCATTTTGGTGTGGTGATGGTTGTAAACTTGGCCATAGGTATGTTTACCCCTCCACTTG
GGGTAACCTTGTTTGCTGCGAGCCAAGTGGCTGAAATCCAGGTTGAAAAAGTCATATTAGCGACGTTGGTACCTTTAGGA
ACTTTGCTCTGCTGCTTGGTTCTTATTACAATATTTCCTTCGATTACACTATTTTGGGTGAATTCGTGA

Protein sequence :
MPTVIVSLLLTFISLSVPIAVAIVIASAVGLYFFSNLPLIIIPQRMFIGLDSFPLMAVPLFILAGNIMGQGGVSKRLVTF
AKSLVGNLQGGLAISCVITSMIFAAVSGSSVATAYAVGAILLPAMIAHGYPKPMATAIQASSANLGIVIPPSVPLIMYGV
STNTSIGKLFLAAIGPGLLMGIALIIMVIVWCIVTGHGKNDANDQQSLLASSKDALLALLMPTMILGGIYGGVFTPTEAS
AIAVIYGLILGVFVYKEISFKDIPRILKGSVVSTSSVMLIIAAASLLSFLVSRSDLPQLLSTFATDNFSTKLQFFLAVNL
LLLVVGMFVETSASILLLAPIFAPIAIIYGIDPVHFGVVMVVNLAIGMFTPPLGVTLFAASQVAEIQVEKVILATLVPLG
TLLCCLVLITIFPSITLFWVNS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 5e-45 41
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 5e-45 41
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 4e-45 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mmwyl1_3116 YP_001341961.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 2e-45 41