Gene Information

Name : int (KPN_04687)
Accession : YP_001338304.1
Strain : Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Genome accession: NC_009648
Putative virulence/resistance : Unknown
Product : putative phage integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 5126372 - 5127859 bp
Length : 1488 bp
Strand : +
Note : -

DNA sequence :
ATGCGTGAAGAGGCCCAATTACTGCTGATTTCTGGCATCGATCCGAGCGCACACCGAAAGGCTGAACGCCTTGCGATAAC
GCCGGAACATACGTTTGAGTCTGTGGCACGCGAATGGGTCACCAGTAACGTGAACTGGTCGGCGGAACATAAGAAGCGGG
TGCTGCGTTATTTCGAGCTCTATGTGTTCCCCACGAACGGCAGCTGTGACATCACAAAAATGAAGGTCAAAGATCTGCTG
GTGCCCATCAAGGAGGTGGAGAAAGCGGGCAAACTGGATGTTGCTTCCCGGCTTCAGCAGCGCACTGCCTGCGTGATGCG
CTACGCCGTCCAGAACGGCATTATCGATCATAACCCTGCATCAGATTTAACCGGCGCGGTTTCCACGCCCAAAGTACGTC
ACCACCCTGCATTAGATTTGAATCTTATCCCTGATTTCCTGGAAAGAGTCGACGACTTTAAAGGACGTAAGTTGACTCAA
CTGGCGGTAAAGCTGGCGCTACTGCTATTCATCCGCTCCAGCGAACTGCGCTTTGCCCGCTGGGATGAAATTGACCTGCG
TAACGCCATGTGGACCATTCCCGCCGAGCGCGAACCGATCCCTGGCGTTAAATATTCAGCGCGTGGGGCGAAGATGCACT
CCCCACACCTGGTCCCATTGTCACGTCAGGCCATCGAACTGCTGCACAAGGTGCGGCAGCACTGCCGACCGGGAACTGAA
TTGGTGTTCCCCGGCGATCATAACTACCGCAAACCGATGAGTGAAAACACTATCAACAAAGCGCTGCGTGTGATGGGCTA
CGACACCCAGAAAGATGTCTGCGGCCACGGTTTTCGCACTATGGCTTGTAGCGCGCTGGTGGAGTCAGGCCTGTGGTCAA
GCGACGCGGTAGAGCGCCAGATGAGCCATCAGGAGCGTAAGCGCGTGCGGGCGGCGTATATCCATAAGGCGCAGCATCTC
GAAGAACGTCGGGAGATGATGCAGTGGTGGGCGGATTATCTGGATGCAAACCGGTTCAGGCATGTGGTGCCGTATGGCTT
TAAAAAGTCGCCGGGAGGCACACTCGACCATATGAGCTTCCAGGAGCGTAATGACCGGCAGCTAGAGGAGCTGAAAGCCA
GAATACTGGCCGACTCGGAATGGCTGACAACGTCTGAGTTATCGGCAAAAGCGGGCTTTCGTTCCGCCGATCCTGATGCT
GGTCCGAAAGGCTGGAAAGCGGCTGGGAAGATATTCTCGCTGAAGGTCGACGGGGAGGATTTGTATCCGGATTATGTTCT
GGATGAGAAAGCGCGGCCTCTCAAGGTTGTCAGGTTGATACTCTCGCTGTTCAAGGAACGCAAAACGCCGTGGGGACTGG
CTATCTGGTTTGGCTCGGCTAATCGCAGGTTGAGAGGAGGGAAGCCGAAAGATTTGCTGATTTCAAAGTCAGAGCTGGTA
CTGCTGGCGGCGCAGGATGAGGTGGAGTCAGGGGATGCTGGTATTTAG

Protein sequence :
MREEAQLLLISGIDPSAHRKAERLAITPEHTFESVAREWVTSNVNWSAEHKKRVLRYFELYVFPTNGSCDITKMKVKDLL
VPIKEVEKAGKLDVASRLQQRTACVMRYAVQNGIIDHNPASDLTGAVSTPKVRHHPALDLNLIPDFLERVDDFKGRKLTQ
LAVKLALLLFIRSSELRFARWDEIDLRNAMWTIPAEREPIPGVKYSARGAKMHSPHLVPLSRQAIELLHKVRQHCRPGTE
LVFPGDHNYRKPMSENTINKALRVMGYDTQKDVCGHGFRTMACSALVESGLWSSDAVERQMSHQERKRVRAAYIHKAQHL
EERREMMQWWADYLDANRFRHVVPYGFKKSPGGTLDHMSFQERNDRQLEELKARILADSEWLTTSELSAKAGFRSADPDA
GPKGWKAAGKIFSLKVDGEDLYPDYVLDEKARPLKVVRLILSLFKERKTPWGLAIWFGSANRRLRGGKPKDLLISKSELV
LLAAQDEVESGDAGI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-98 61
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-98 61
int CAC81896.1 integrase Not tested LEE II Protein 9e-96 59
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 5e-96 59
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 8e-96 59
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 1e-95 59
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-96 59
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 6e-96 59
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-96 59
int AAL51003.1 CP4-like integrase Not tested LEE Protein 1e-95 59
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 8e-94 59
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 5e-96 59
int AAL51028.1 CP4-like integrase Not tested LEE Protein 5e-96 59
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 7e-96 59
int-phe AAL60261.1 Int-phe Not tested LEE Protein 5e-96 59
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 7e-96 59
int AAK00456.1 Int Not tested SHI-1 Protein 2e-95 58
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 9e-100 58
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 1e-95 58
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 1e-95 58
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 2e-94 58
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 7e-96 58
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 2e-95 58
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 8e-99 58
int YP_002346908.1 integrase Not tested HPI Protein 1e-79 54
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 1e-79 54
int CAA08754.1 integrase Not tested HPI Protein 4e-80 54
int2 NP_993013.1 integrase Not tested HPI Protein 1e-79 54
int CAB59974.1 integrase Not tested HPI Protein 3e-80 54
int CAA21384.1 - Not tested HPI Protein 1e-79 54
unnamed AAD17660.1 unknown Not tested HPI Protein 3e-77 53
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 7e-85 52
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 7e-85 52
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 2e-77 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
int YP_001338304.1 putative phage integrase VFG1536 Protein 5e-100 58
int YP_001338304.1 putative phage integrase VFG0626 Protein 5e-96 58
int YP_001338304.1 putative phage integrase VFG1693 Protein 7e-95 58