Gene Information

Name : ygiX (KPN_03440)
Accession : YP_001337066.1
Strain : Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Genome accession: NC_009648
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional regulator QseB
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3765062 - 3765721 bp
Length : 660 bp
Strand : +
Note : response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes

DNA sequence : 
ATGCGCATATTACTGGTGGAAGATGACAAGCTTATCGGCGACGGCATCAAAGCCGGGCTGAGCAAAATGGGCTTTAGCAT
TGACTGGTTTACCGCCGGGCTGGAGGGCAAAAATGCCTTATACAGCGCCCCCTACGACGCCGCAATCCTTGACCTCACCC
TACCCGGCATCGATGGCCTCGATATTCTGCGCGAATGGCGCGATAAAGGCCGCCATGAGCCGGTGCTGATCCTCACCGCC
CGCGATGCCCTCAACCAGCGGGTGGAGGGCCTGCGCCTGGGCGCCGATGACTACCTGTGCAAACCTTTCGCCCTGATTGA
GGTGGCAGCGCGCCTCGAAGCGTTGATCCGCCGCGCGCACGGCCAGAGCAGCAGCGAACTGCGCCACGGCAAGGTGATCC
TCGATCCGAACCGCTTAACCGCCAGCCTCGACGGCGAAAGCCTGGCGCTGAAGCCGAAGGAGTTCGCCCTGCTGGAACTG
CTTATGCGCAACGCCGGGCGCGTATTGCCGCGTAAGCTTATCGAGGAAAAGCTCTACACCTGGGACGACGAGGTCTCCAG
CAACGCCGTGGAAGTTCACGTCCATCATCTGCGCCGCAAGCTCGGCAGCGACTTTATCCGTACCGTCCACGGCATCGGCT
ATACCCTGGGTGACGCATGA

Protein sequence : 
MRILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYSAPYDAAILDLTLPGIDGLDILREWRDKGRHEPVLILTA
RDALNQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAHGQSSSELRHGKVILDPNRLTASLDGESLALKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDDEVSSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-40 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ygiX YP_001337066.1 DNA-binding transcriptional regulator QseB BAC0487 Protein 4e-41 48
ygiX YP_001337066.1 DNA-binding transcriptional regulator QseB NC_002516.2.879194.p Protein 1e-30 42
ygiX YP_001337066.1 DNA-binding transcriptional regulator QseB BAC0347 Protein 3e-33 42
ygiX YP_001337066.1 DNA-binding transcriptional regulator QseB BAC0638 Protein 3e-28 42
ygiX YP_001337066.1 DNA-binding transcriptional regulator QseB BAC0197 Protein 5e-35 42
ygiX YP_001337066.1 DNA-binding transcriptional regulator QseB BAC0083 Protein 2e-34 41
ygiX YP_001337066.1 DNA-binding transcriptional regulator QseB BAC0308 Protein 4e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ygiX YP_001337066.1 DNA-binding transcriptional regulator QseB VFG0473 Protein 2e-40 47
ygiX YP_001337066.1 DNA-binding transcriptional regulator QseB VFG1390 Protein 3e-32 42