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Name : set4nm (NWMN_0391) Accession : YP_001331425.1 Strain : Staphylococcus aureus Newman Genome accession: NC_009641 Putative virulence/resistance : Virulence Product : superantigen-like protein Function : - COG functional category : R : General function prediction only COG ID : COG3889 EC number : - Position : 439407 - 440333 bp Length : 927 bp Strand : + Note : these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation DNA sequence : ATGAAAATAACAACGATTGCTAAAACAAGTTTAGCACTAGGCCTTTTAACAACAGGTGTAATCACAACGACAACGCAAGC AGCAAACGCGACAACACCATCTTCCACTAAAGTGGAAGCACCACAATCAACACCGCCCTCAACTAAAATAGAAGCACCGC AATCAAAACCAAACGCGACAACACCGCCCTCAACTAAAGTAGAAGCACCGCAACAAACAGCAAATGCGACAACACCGCCT TCAACTAAAGTGACAACACCTCCATCAACAAACACGCCACAACCAATGCAATCTACTAAATCAGACACACCACAATCGCC AACCACAAAACAAGTACCAACAGAAATAAATCCTAAATTTAAAGATTTAAGAGCGTATTATACGAAACCAAGTTTAGAAT TTAAAAATGAGATTGGTATTATTTTAAAAAAATGGACGACAATAAGATTTATGAATGTTGTCCCAGATTATTTCATATAT AAAATTGCTTTAGTTGGTAAAGATGATAAAAAATATGGTGAAGGAGTACATAGGAATGTCGATGTATTTGTCGTTTTAGA AGAAAATAATTACAATCTGGAAAAATATTCTGTCGGTGGTATCACAAAGAGTAATAGTAAAAAAGTTGATCACAAAGCAG GAGTAAGAATTACTAAGGAAGATAATAAAGGTACAATCTCTCATGATGTTTCAGAATTCAAGATTACTAAAGAACAGATT TCCTTGAAAGAACTTGATTTTAAATTGAGAAAACAACTTATTGAAAAAAATAATCTGTACGGTAACGTTGGTTCAGGTAA AATTGTTATTAAAATGAAAAACGGTGGAAAGTACACGTTTGAATTGCACAAAAAATTACAAGAAAATCGCATGGCAGATG TCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAA Protein sequence : MKITTIAKTSLALGLLTTGVITTTTQAANATTPSSTKVEAPQSTPPSTKIEAPQSKPNATTPPSTKVEAPQQTANATTPP STKVTTPPSTNTPQPMQSTKSDTPQSPTTKQVPTEINPKFKDLRAYYTKPSLEFKNEIGIILKKWTTIRFMNVVPDYFIY KIALVGKDDKKYGEGVHRNVDVFVVLEENNYNLEKYSVGGITKSNSKKVDHKAGVRITKEDNKGTISHDVSEFKITKEQI SLKELDFKLRKQLIEKNNLYGNVGSGKIVIKMKNGGKYTFELHKKLQENRMADVIDGTNIDNIEVNIK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| set4nm | YP_001331425.1 | superantigen-like protein | Virulence | vSa¥á | Protein | 3e-119 | 100 |
| SAUSA300_0398 | YP_493112.1 | superantigen-like protein | Virulence | vSa¥á | Protein | 3e-119 | 100 |
| SACOL0472 | YP_185362.1 | superantigen-like protein | Virulence | vSa¥á | Protein | 3e-117 | 99 |
| SAKOR_00408 | YP_008490592.1 | Exotoxin | Virulence | vSa¥á | Protein | 1e-118 | 98 |
| set9 | NP_373635.1 | superantigen-like protein | Virulence | vSa¥á | Protein | 6e-110 | 89 |
| SAS0387 | YP_042512.1 | superantigen-like protein | Virulence | vSa¥á | Protein | 4e-110 | 88 |
| set19 | NP_645202.1 | superantigen-like protein | Virulence | vSa¥á | Protein | 4e-110 | 88 |
| SAR0424 | YP_039876.1 | superantigen-like protein | Virulence | vSa¥á | Protein | 2e-90 | 70 |
| SAR0425 | YP_039877.1 | superantigen-like protein | Not tested | vSa¥á | Protein | 2e-81 | 63 |
| set6nm | YP_001331427.1 | superantigen-like protein | Virulence | vSa¥á | Protein | 1e-34 | 44 |
| SAUSA300_0400 | YP_493114.1 | superantigen-like protein | Virulence | vSa¥á | Protein | 1e-34 | 44 |
| SAMSHR1132_03810 | YP_005324902.1 | exotoxin | Virulence | vSa¥á | Protein | 5e-23 | 42 |
| SAS0389 | YP_042514.1 | superantigen-like protein | Virulence | vSa¥á | Protein | 2e-32 | 42 |
| set21 | NP_645204.1 | superantigen-like protein | Virulence | vSa¥á | Protein | 2e-32 | 42 |
