|
Name : Smed_0383 (Smed_0383) Accession : YP_001326075.1 Strain : Sinorhizobium medicae WSM419 Genome accession: NC_009636 Putative virulence/resistance : Unknown Product : catalase Function : - COG functional category : P : Inorganic ion transport and metabolism COG ID : COG0753 EC number : - Position : 410335 - 411819 bp Length : 1485 bp Strand : + Note : PFAM: Catalase domain protein; KEGG: sme:SMc00819 catalase hydroperoxidase HPII(III) protein DNA sequence : ATGACAGATCGTCCGACGATGACCACGACCGCCGGTGCACCGGTGCCGGACAACCAGAACGCGCTGACTGCGGGGCCGCG CGGCGGCATCATGATGCAGGACTACCAGCTCATCGAGAAGCTGGCGCACCAGAACCGCGAGCGCATTCCGGAACGCGTCG TGCATGCCAAGGGCTGGGGTGCCTTCGGGACGTTGAAGATCACGGGCGACATCTCGGAATATACAAAGGCAATGTGTCTC CAGCCCGGCGCCGAAACGCCGATGCTTGCCCGCTTCTCGACCGTGGCCGGCGAGCAGGGCGCCGCCGATCACGAGCGTGA CGTCCGCGGTTTCGCGCTGAAGTTCTATACCGGGGAGGGGAACTGGGATCTCGTCGGCAACAACACGCCCGTCTTCTTCA TCCGGGATCCCTACAAGTTCCCGGACTTCATCCATACGCAGAAGCGGCATCCGAAGACCAATCTTCGCTCCGCCACCGCC ATGTGGGACTACTGGTCACTCTCGCCGGAAAGCTTGCATCAGGTGACGATCCTGATGTCCGATCGCGGCCTGCCGCAGAC GCCGATGCATATGAACGGCTATGGCTCGCACACCTACTCCTTCTGGAACGACGCAGGCGAGCGCTATTGGGTCAAGTTCC ACTTCAAGACACAGCAGGACCACAAGTTCTTTACCAATGAAGAAGGCGAAGCGGTCATAGGCAAGACCCGCGAGGGCTAT CAGGAGGCGCTGTTTTACGCCATAGAGAACGGCGCGTTTCCGCGCTGGACCGTGCAGGTCCAGATCATGCCGGAGCTCGA TTCCGAAAAGACGCCGTACAACCCGTTCGACCTGACGAAGGTTTGGCCGCACGCCGATTTCCCGCCGATCGAGATCGGCG TGCTGGAACTCAACCGCAACCCCGAAAATTACTTCGCCGAGATCGAAAACGCGGCCTTCTCGCCTTCCAACATCGTTCCG GGCATCGGCTTCTCGCCGGACAAAGTGCTGCAGGCGCGACTGTTCTCCTATGCGGACGCCCACCGCTATCGCCTCGGCAC CCATTACGAAAACATCCCGGTCAACCAGCCGCGCTGCCCGGTTCACCATTATCATCGCGATGGTCAGATGAACACCTATG GCGGCATTCGCACCGGCAACCCGGAGGCCTATTACGAGCCGAACTCCTTCGATGGTCCGGCGGAACAACCGCTTGCCAAG GAACCGCCGCTAAAGGTGGACGGCGACATGTCGCGCTACGATCACCGCGTGGGCAATGACGATTATGTCCAGGTGCGCGC CTTGTTCAACCTCTTCGACGAAGGGCAGAAGTCGCGCCTCTTCTCCAACATCGCAGCTGCGATGGGCGGCGTTCCGAGCG AGATCATCGAGCGGCAGCTCATTCATTTCGCCCGGGTTCATCCGGACTATGAGACAGGCGTTCGCGCGGCGTTGAAGGCC GCCCACGGCTACGGGGCGGATACGATCAGTACGGCTGCCGAGTAA Protein sequence : MTDRPTMTTTAGAPVPDNQNALTAGPRGGIMMQDYQLIEKLAHQNRERIPERVVHAKGWGAFGTLKITGDISEYTKAMCL QPGAETPMLARFSTVAGEQGAADHERDVRGFALKFYTGEGNWDLVGNNTPVFFIRDPYKFPDFIHTQKRHPKTNLRSATA MWDYWSLSPESLHQVTILMSDRGLPQTPMHMNGYGSHTYSFWNDAGERYWVKFHFKTQQDHKFFTNEEGEAVIGKTREGY QEALFYAIENGAFPRWTVQVQIMPELDSEKTPYNPFDLTKVWPHADFPPIEIGVLELNRNPENYFAEIENAAFSPSNIVP GIGFSPDKVLQARLFSYADAHRYRLGTHYENIPVNQPRCPVHHYHRDGQMNTYGGIRTGNPEAYYEPNSFDGPAEQPLAK EPPLKVDGDMSRYDHRVGNDDYVQVRALFNLFDEGQKSRLFSNIAAAMGGVPSEIIERQLIHFARVHPDYETGVRAALKA AHGYGADTISTAAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| katA | ABD94664.1 | catalase isozyme A | Not tested | ExoU island A | Protein | 1e-127 | 57 |
| katA | YP_005126717.1 | catalase | Not tested | Not named | Protein | 9e-104 | 48 |
| katA | YP_005680448.1 | catalase | Not tested | PiCp 3 | Protein | 4e-102 | 47 |
| katA | YP_005682539.1 | catalase | Not tested | PiCp 3 | Protein | 4e-102 | 47 |
| katA | YP_003782575.1 | catalase | Not tested | PiCp 3 | Protein | 4e-102 | 47 |
| katA | YP_005684630.1 | catalase | Not tested | PiCp 3 | Protein | 4e-102 | 47 |
