|
Name : Smed_3427 (Smed_3427) Accession : YP_001329080.1 Strain : Sinorhizobium medicae WSM419 Genome accession: NC_009636 Putative virulence/resistance : Virulence Product : 3-deoxy-manno-octulosonate cytidylyltransferase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1212 EC number : - Position : 3632689 - 3633441 bp Length : 753 bp Strand : + Note : CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS DNA sequence : ATGAATCGTGAACAAGCGGGCAAAGCCCTCGTACTCATTCCGGCGCGCATGGCGTCGACGCGCCTGCCCGGCAAGCCGCT TGCCGACATTTGCGGGCTGCCGATGATCGTGCAGGTGGCAAGGCGGGCGGCGGAGGCCGAGGTCGGCCGGATCGTGGTGG CCGTGGATCATCCGGAGGTTTTCGCAGCCGTGAGCGACGCCGGCTTCGAGGCGATCATGACGCGGGTCGACCACCAGTCC GGCTCCGACCGGATTCACGAGGCGCTTCTTAAGGCCGATCCGCAAGGTGAGGCGGAAATCGTCATCAACGTGCAGGGCGA TTTGCCGACCATCGAGCCCGGCCCGATCCGTGCGGCACTGAAGCCGCTGGAAAATCCTTCGACGGACATTGCCACGCTGA CCGTGGCGATCACCGACGAGCACGAAAAGACCAACCCCAACGTCGTCAAGGTCGTCGGCTCGCCGCTGTCGCAGAGCCGC TTCCGCGCGCTCTATTTCACCCGCGCGACCGCGCCCTACGGCGAAGGTCCTCTCTATCACCATATCGGCCTTTACGCCTA TCGCCGCAGGGCACTCGAGACCTTCGTTTCGTTGAAGCCGTCGGCGCTTGAAAAGCGCGAATCGCTGGAACAGCTGCGGG CGCTCGAAGCGGGCATGCGCATCGATGTGGAGATCGTCGATTCGGTGCCGCTCGGCGTCGACACGCCTGCAGATCTCGAC AAGGCCCGCCGGATCCTTTCGGCCCGGGCCTGA Protein sequence : MNREQAGKALVLIPARMASTRLPGKPLADICGLPMIVQVARRAAEAEVGRIVVAVDHPEVFAAVSDAGFEAIMTRVDHQS GSDRIHEALLKADPQGEAEIVINVQGDLPTIEPGPIRAALKPLENPSTDIATLTVAITDEHEKTNPNVVKVVGSPLSQSR FRALYFTRATAPYGEGPLYHHIGLYAYRRRALETFVSLKPSALEKRESLEQLRALEAGMRIDVEIVDSVPLGVDTPADLD KARRILSARA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsU | CAE85213.1 | KpsU protein | Virulence | PAI V 536 | Protein | 3e-29 | 46 |
| kpsU | YP_854332.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | Not tested | PAI I APEC-O1 | Protein | 5e-28 | 45 |
| kpsU | AAZ04469.1 | CMP-KDO synthetase | Virulence | PAI I APEC-O1 | Protein | 4e-28 | 45 |
