Gene Information

Name : Smed_3410 (Smed_3410)
Accession : YP_001329066.1
Strain : Sinorhizobium medicae WSM419
Genome accession: NC_009636
Putative virulence/resistance : Virulence
Product : N-acetylglucosamine-6-phosphate deacetylase
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1820
EC number : -
Position : 3617383 - 3618543 bp
Length : 1161 bp
Strand : +
Note : TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; KEGG: sme:SMc02878 probable N-acetylglucosamine-6-phosphate deacetylase protein

DNA sequence : 
ATGAACGGGAACAAGACGATCACCGGAGCACGGGTTTTCGACGGCATCGACTGGCACGACGGCGCCGCCCTCGTGGTCGA
GTCAGGGCACGTGAAGTCGATTGTGCCGGCGGGGAGCGTAGCCGTCGGTGGCGAGACCGTCGACGCCCATGGCCTGCTTC
TCGTACCCGGCTTCATCGATCTTCAGGTGAATGGCGGCGGCGGCGCACTCCTGAACGAAGAACCTACCCTCGCAGGCATC
CGGCAGATCTGCTCGGCGCATGCGACATTCGGTACGACGGCGCTGCTGCCGACGCTGATCACCGATACCCGCGCCGTCAG
GACCGCGGCGATAGCGGCAGGCCTCGAGGCTAAAGGAGCCGCGGTGCCGGGCTTCCTCGGCCTGCATCTCGAAGGCCCTC
ATCTCTCGGTCGCGCGTAAGGGGGCGCACGATCCCGCGCTGATCCGCCGGATGGAGGACGACGATCTCGCCGAGATACTT
GGCTGCGCAAAGGCGCTCGGCCGCCTGATGCTGACCGTGGCGCCGGAAAATGCCACAAAGGAGCAGGTTCGGGCGCTGGC
CGATGCCGGGGTCGTGGTGAGCCTTGGCCATACCGATGTGGATTACGATACCGCCCGCGCCTATGCCAAAGCGGGAGCGA
GAACCGTCACGCACCTCTTCAACGCCATGAGCGGGCCTGGTCACCGTGAGCCGGGCGTTGTCGGTGCCGCTCTGGCGACG
GGCGCTCTCCATGCCGGCATGATCGCCGACGGCTATCATGTCCACCCGGCTTCCATGGGCATAGCATTGCGCGGCAAGAA
GGGACCGGGGCAGATCTTTCTGGTCACCGACGCCATGTCGCCCCTCGGCACTGACCAGACGAGCTTCTTCCTCAACGGAC
GAAAAATCCTGCGGCAGGACGGCCGCCTGACTCTCGCCGACGGCACCCTCGCCGGCGCCGATATCGATATGTTGTCTTCT
GTTCGTTTCGTCCACCAGAGGCTCGGCCTTCCGGTCGAGGAGGCGATCCGCATGGCGTCCGCCTATCCCGCCGACGCCAT
GGGAATAGCCTCGCACAAGGGCCGGCTCCTGCCGGGTGCGGATGCCGATTTCGTGCTGCTCACGCCGGAGCTCGGCATCA
GATCGACCTGGATCGGCGGAGAAAGAGTCTTTGCCGCTTGA

Protein sequence : 
MNGNKTITGARVFDGIDWHDGAALVVESGHVKSIVPAGSVAVGGETVDAHGLLLVPGFIDLQVNGGGGALLNEEPTLAGI
RQICSAHATFGTTALLPTLITDTRAVRTAAIAAGLEAKGAAVPGFLGLHLEGPHLSVARKGAHDPALIRRMEDDDLAEIL
GCAKALGRLMLTVAPENATKEQVRALADAGVVVSLGHTDVDYDTARAYAKAGARTVTHLFNAMSGPGHREPGVVGAALAT
GALHAGMIADGYHVHPASMGIALRGKKGPGQIFLVTDAMSPLGTDQTSFFLNGRKILRQDGRLTLADGTLAGADIDMLSS
VRFVHQRLGLPVEEAIRMASAYPADAMGIASHKGRLLPGADADFVLLTPELGIRSTWIGGERVFAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1783 NP_231418.1 N-acetylglucosamine-6-phosphate deacetylase Not tested VPI-2 Protein 2e-43 44
nagA-2 YP_001217323.1 N-acetylglucosamine-6-phosphate deacetylase Not tested VPI-2 Protein 2e-43 44
nagA ACA01848.1 N-acetylglucosamine-6-phosphate deacetylase Not tested VPI-2 Protein 9e-44 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Smed_3410 YP_001329066.1 N-acetylglucosamine-6-phosphate deacetylase VFG1116 Protein 8e-44 44