Gene Information

Name : Smed_3074 (Smed_3074)
Accession : YP_001328735.1
Strain : Sinorhizobium medicae WSM419
Genome accession: NC_009636
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 3221528 - 3222247 bp
Length : 720 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc03837 putative ATP-binding ABC transporter protein

DNA sequence :
GTGGCAAAAACCATCATCGAGTTGAAAAATGCAGATCTGACGCTGGGCGAGGCCGCCGCCTCCGTGCATGTGCTGAAAGG
TGTGAGCCTCGCGATCAATAGCGGCGAATCGGTCGGCATCGTCGGCCCCTCGGGGTCGGGCAAATCCACGCTGCTCATGG
TCATGGCCGGACTGGAGCGGCTCGACGGCGGCGAAATCATCATCGCCGACACGGCGCTCCACCGCCTCGGCGAGGATGCG
GTCGCCGATTTCCGCGGCCGCAATATCGGCATCGTCTTCCAGTCATTTCATCTCATTCCAAACATGACGGCTCTGGAGAA
CGTCGCTGTGCCGCTCGAGCTCGCCAATGTCGGCAACGCCTTCGACATAGCGCGTAAGGAACTGATCGCCGTCGGACTCG
GCGAGCGCCTGACGCACTACCCCGGGCAGCTTTCCGGCGGCGAGCAGCAGCGGGTGGCGATCGCCCGGGCGCTCGCGCCC
TCGCCGAAACTCCTGATCGCCGACGAGCCGACGGGCAACCTCGATGCCGAGACCGGCCGGCAGATCACCGACCTGCTCTT
CGCCGAGCAGCGCGAACGCGGCATGACGCTTGTCCTCGTCACGCATGATGCGGCGCTGGCCGGGCGCTGCGAACGGCAGG
TGCGCGTCCGCTCCGGTGAAATCGTCTCCGACGCGGAACGGCTCTCTGCCTCGACCCGGCAGGGAGCCGTGTCAGCATGA

Protein sequence :
MAKTIIELKNADLTLGEAAASVHVLKGVSLAINSGESVGIVGPSGSGKSTLLMVMAGLERLDGGEIIIADTALHRLGEDA
VADFRGRNIGIVFQSFHLIPNMTALENVAVPLELANVGNAFDIARKELIAVGLGERLTHYPGQLSGGEQQRVAIARALAP
SPKLLIADEPTGNLDAETGRQITDLLFAEQRERGMTLVLVTHDAALAGRCERQVRVRSGEIVSDAERLSASTRQGAVSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 3e-28 43
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-29 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-29 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 7e-29 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Smed_3074 YP_001328735.1 ABC transporter-like protein NC_008702.1.4606598. Protein 7e-34 47
Smed_3074 YP_001328735.1 ABC transporter-like protein NC_012469.1.7686878. Protein 7e-38 43