Gene Information

Name : Smed_2917 (Smed_2917)
Accession : YP_001328581.1
Strain : Sinorhizobium medicae WSM419
Genome accession: NC_009636
Putative virulence/resistance : Virulence
Product : ABC-3 protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3061738 - 3062595 bp
Length : 858 bp
Strand : +
Note : PFAM: transport system permease protein; ABC-3 protein; KEGG: sme:SMc02506 putative iron transport system membrane ABC transporter protein

DNA sequence : 
ATGATGCCATCGCTCGACATGCTCCTTGCGGTCTTCGAGTTCGAGTTCATGCGCAACGCGCTGCTGATCTCGGTTCTGGT
CGCGATCCCCACGGCGATGCTCTCATGCTTCCTGGTGCTCAAGGGCTGGTCGCTGATGGGCGATGCGATATCGCATGCGG
TCTTCCCCGGCATCGTTATCTCCTACATCGCCGGCCTGCCGCTCGCCGTCGGTGCCTTTACCGCAGGCATGTGCTGCGCG
CTTCTGACCGGCTATCTGAAGGAAAACAGCCGCATCAAGCAGGACACGGTGATGGGCGTCGTCTTTTCCGGGATGTTCGG
TCTCGGCCTGGTGCTCTACACCAAGATTCAGAGCGACGTGCATCTCGACCACATCCTCTTCGGCGACATGCTCGGCATCG
GCTGGGGCGACATATTCGAAACCGGCCTCATGGCGCTTCTGGCCGGCGGCATCCTCGGCCTGAAATGGCGCGATCTCCTG
CTGCACGCCTTCGATCCGGCGCATGCCCGCGCCATCGGACTCAAGGTCGGTTGGCTGCACTACGGCCTGCTCGCGATCCT
GTCGCTGACGATCGTTGGCGCGCTGAAGGCGGTCGGCCTTATCCTGGCGATAGCCATGCTGATCGCCCCCGGCGCTATCG
CCTTTCTCGTCACCCGGACATTCGGCGCGATGCTTGCGGTTGCCGTAATGGTCGCCGTCGCCGCTTCTTTTTGCGGCGTC
TACCTGTCCTTCTTCATCGACAGTGCTCCGGCACCCACCATTGTCCTTCTGATGACGGCTATATTCCTTCTCGCCTTCGC
CTATTCCAGCTGGAGGACGGCCCGCGCCGAAGCCGAGCGGACAGGCGTGCTGGAATGA

Protein sequence : 
MMPSLDMLLAVFEFEFMRNALLISVLVAIPTAMLSCFLVLKGWSLMGDAISHAVFPGIVISYIAGLPLAVGAFTAGMCCA
LLTGYLKENSRIKQDTVMGVVFSGMFGLGLVLYTKIQSDVHLDHILFGDMLGIGWGDIFETGLMALLAGGILGLKWRDLL
LHAFDPAHARAIGLKVGWLHYGLLAILSLTIVGALKAVGLILAIAMLIAPGAIAFLVTRTFGAMLAVAVMVAVAASFCGV
YLSFFIDSAPAPTIVLLMTAIFLLAFAYSSWRTARAEAERTGVLE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-80 65
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-80 65
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-80 65
sitD NP_461785.1 permease Virulence SPI-1 Protein 3e-80 65
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-80 65

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Smed_2917 YP_001328581.1 ABC-3 protein BAC0352 Protein 1e-80 65
Smed_2917 YP_001328581.1 ABC-3 protein BAC0442 Protein 4e-60 54
Smed_2917 YP_001328581.1 ABC-3 protein BAC0441 Protein 4e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Smed_2917 YP_001328581.1 ABC-3 protein VFG0528 Protein 1e-80 65