Gene Information

Name : Smed_2916 (Smed_2916)
Accession : YP_001328580.1
Strain : Sinorhizobium medicae WSM419
Genome accession: NC_009636
Putative virulence/resistance : Virulence
Product : ABC-3 protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3060884 - 3061741 bp
Length : 858 bp
Strand : +
Note : PFAM: transport system permease protein; ABC-3 protein; KEGG: sme:SMc02507 putative iron transport system membrane ABC transporter protein

DNA sequence : 
ATGATCGCCATGCTCGCCGAGCCGTTCTCCTATAGCTATATGGTCAATGCCATGTGGGTCAGTGCGCTCGTTGGCGCGGT
CTGTGCCTTTCTGTCAGCCTATCTCATGCTGAAAGGCTGGTCGCTGATCGGCGATGCGCTCTCCCACTCGATCGTGCCGG
GAGTTGCCGGCGCCTATATGCTCGGGCTCCCTTTCTCGCTTGGCGCCTTCTTCTCCGGTGCGCTGGCCGCGGCGGCAATG
CTGTTCCTGAACCAGCGCACGCGGCTGAAGGAGGACACGATCATCGGCCTGATCTTCACCTCCTTCTTCGGGCTCGGCCT
GTTCATGGTCTCCCTCTCGCCAACCTCGGTGAATATCCAGACGATCGTGCTGGGCAACATACTCGCAATAACGCCGGCCG
ACACCGTACAGCTTGCCATCATCGGCATCGTCTCGCTGCTGATCCTGTGGGCGAAGTGGAAGGATCTGCTGGTGACCTTC
TTCGATGAAAGCCACGCCCGTTCGATCGGCATCAACACCACCTTTCTCAAAATTCTCTTCTTCACGCTGCTCTCGGCCTC
GACGGTAGCGGCGCTGCAGACGGTCGGCGCCTTTCTGGTCATCGCCATGGTCGTAACCCCCGGCGCGACCGCCTATCTCC
TGACCGACCGTTTCCCGCGGCTGATCTTGATCAGCATCGTCATAGGGGCACTGACGAGCTTCTTTGGAGCCTATGCGAGC
TACTTCCTGGACGGCGCCACCGGCGGCATCATCATCGTGCTGCAGACGCTGATCTTCCTGTTCGCCTTCGTGTTCGCCCC
CAAACACGGGCTGCTCGCCGCCCGCCGCCGCTCAACGGAAGCTCTGGAGACCGCATGA

Protein sequence : 
MIAMLAEPFSYSYMVNAMWVSALVGAVCAFLSAYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFSLGAFFSGALAAAAM
LFLNQRTRLKEDTIIGLIFTSFFGLGLFMVSLSPTSVNIQTIVLGNILAITPADTVQLAIIGIVSLLILWAKWKDLLVTF
FDESHARSIGINTTFLKILFFTLLSASTVAALQTVGAFLVIAMVVTPGATAYLLTDRFPRLILISIVIGALTSFFGAYAS
YFLDGATGGIIIVLQTLIFLFAFVFAPKHGLLAARRRSTEALETA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 8e-84 80
sitC NP_461784.1 permease Virulence SPI-1 Protein 8e-84 80
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 7e-84 80
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 7e-84 80
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 6e-84 80

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Smed_2916 YP_001328580.1 ABC-3 protein BAC0351 Protein 4e-84 80
Smed_2916 YP_001328580.1 ABC-3 protein BAC0441 Protein 7e-73 70

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Smed_2916 YP_001328580.1 ABC-3 protein VFG0527 Protein 3e-84 80