Gene Information

Name : Smed_2915 (Smed_2915)
Accession : YP_001328579.1
Strain : Sinorhizobium medicae WSM419
Genome accession: NC_009636
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 3059952 - 3060887 bp
Length : 936 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02508 putative iron transport ATP-binding ABC transporter protein

DNA sequence : 
ATGAATCTTCAGGAAATGGCCCGCGCCAATCCGAAAGCAGCTCCGGAAGAGGAAGGGAGCGGCATTCGCGTCAGCGGAGC
CACGGTGACCTACCGCAATGGTCATCGGGCATTGCGCGATGCCTCCTTCAAAATCCCCACCGGCACGATCGCCGCCCTTG
TCGGCGTCAACGGCAGCGGCAAGTCGACGCTCTTCAAGGCGATCATGGGCTTCGTGCGGCTGGCGAAGGGCGACATCTCC
ATCCTGGGAATGACGGTCCCGCAGGCATTGAGGCAGAACCTCGTCGCCTATGTGCCGCAGGCCGAAGAGGTGGACTGGAA
CTTTCCGGTTCTCGTCGAAGACGTGGTGATGATGGGCCGTTACGGCCGCATGAACATGCTGCGCATCCCGAAAAAGGCCG
ATCACAACGCTGTCGAAACGGCGCTGGCAAGGGTCGGCATGAGCGAATTCCGCAAGCGCCAGATCGGCGAGCTGTCCGGC
GGCCAGAAGAAGCGGGTCTTCCTGGCCCGGGCGCTTGCCCAGGACGGTCGCGTCATTCTTCTCGACGAACCTTTCACGGG
GGTCGACGTGAAAACGGAGGATGCGATCATCCGCCTGCTCGTCGCGCTTCGCGAGGAGGGGCGCGTGATGCTCGTCTCCA
CGCACAATCTCGGCAGCGTGCCGGAATTCTGCGACCGCGCCATCCTCCTGAAGAATACCGTGCTCGCCTATGGGCCGACG
GAAACCACGTTCACGCGCGAAAACCTGGAACTCGCCTTCGGCGGCGTACTGCGTCACTTCGTGCTTGGCGGCGAGAATCT
CCACGACGATGCCGACCCGCGCCAGCTCTCGGTCATCAGCGACGACGAGCGCCCGCTCGTCATGTATGGCGCCCGCGACC
GAATGGTCGCCCAGCCGGCAAAACCGGAACCAGACTCCGAGGCGGACTCCGAATGA

Protein sequence : 
MNLQEMARANPKAAPEEEGSGIRVSGATVTYRNGHRALRDASFKIPTGTIAALVGVNGSGKSTLFKAIMGFVRLAKGDIS
ILGMTVPQALRQNLVAYVPQAEEVDWNFPVLVEDVVMMGRYGRMNMLRIPKKADHNAVETALARVGMSEFRKRQIGELSG
GQKKRVFLARALAQDGRVILLDEPFTGVDVKTEDAIIRLLVALREEGRVMLVSTHNLGSVPEFCDRAILLKNTVLAYGPT
ETTFTRENLELAFGGVLRHFVLGGENLHDDADPRQLSVISDDERPLVMYGARDRMVAQPAKPEPDSEADSE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 7e-91 71
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 1e-89 71
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 2e-89 71
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-89 71
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 7e-91 71

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Smed_2915 YP_001328579.1 ABC transporter-like protein BAC0350 Protein 7e-90 71
Smed_2915 YP_001328579.1 ABC transporter-like protein BAC0440 Protein 3e-91 65
Smed_2915 YP_001328579.1 ABC transporter-like protein BAC0400 Protein 5e-47 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Smed_2915 YP_001328579.1 ABC transporter-like protein VFG0526 Protein 7e-90 71