Gene Information

Name : Smed_2914 (Smed_2914)
Accession : YP_001328578.1
Strain : Sinorhizobium medicae WSM419
Genome accession: NC_009636
Putative virulence/resistance : Virulence
Product : periplasmic solute binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 3059050 - 3059955 bp
Length : 906 bp
Strand : +
Note : PFAM: periplasmic solute binding protein; KEGG: sme:SMc02509 putative iron-binding periplasmic ABC transporter protein

DNA sequence : 
ATGATTCAATCAACGAGGCGCATGATCGTAGCGGCAGCAGCGGCAATGGCCGTCTGTTCCATCATGCCGGCGGCGGCCCC
GGCAGCGGAAAAACTCAAGGCAGTCACCACCTTCACGGTCATCGCCGATATGGCGCAGAACGTCGCGGGCGACGTCGCAG
TGGTCGAATCGATCACCAAGCCCGGCGCCGAGATCCATAATTATCAACCGACGCCGCGCGATATTCTCAAGGCCCATGAT
GCCGACCTTATTCTCTGGAACGGGCTGAATCTCGAGCTCTGGTTCGAAAGATTTTTCCAGAACTTCGACGACGTTCCGGG
GATCGTCGTTTCGCAGGGTGTCGAGCCGATGGGCATCGCCGAAGGCCCCTATACCGGCAAGCCAAACCCGCATGCATGGA
TGTCGCCGTCTGCCGCGCTGGTCTATGTCGACAACATCCGCGACGCCTTCGTGAAATACGATCCTGCGAACGAGGCGGCC
TATAAAGCCAATGCCGAGGCTTACAAGAAGAAGATCGAGGCGGCCGTGGCACCGATCCGCGCTCAGCTCGACGGGATTCC
GCTGGAAAGGCGGTGGCTCGTTTCCAGCGAGGGCGCCTTCAGCTATCTCGCCCGTGATTTCGGCCTGAAGGAGCTTTATC
TCTGGCCGATCAATGCCGACCAGCAAGGGACGCCACAGCAGGTGCGCAAGGTGATCGACGCGGTTCGGGCCAATAATATC
CCCGTCGTCTTTTCCGAGAGCACCATCTCGCCCGATCCGGCAGAGCAGGTCGCGCGGGAGACGGGTGCAAAATACGGGGG
CGTGCTCTATGTCGACTCCTTGAGCGAGGCCGACGGGCCCGTTCCGACCTATATCGATCTGCTGCGCGTTACATCGGAAA
CGATCGCGAAAGGCTTGTCGCAATGA

Protein sequence : 
MIQSTRRMIVAAAAAMAVCSIMPAAAPAAEKLKAVTTFTVIADMAQNVAGDVAVVESITKPGAEIHNYQPTPRDILKAHD
ADLILWNGLNLELWFERFFQNFDDVPGIVVSQGVEPMGIAEGPYTGKPNPHAWMSPSAALVYVDNIRDAFVKYDPANEAA
YKANAEAYKKKIEAAVAPIRAQLDGIPLERRWLVSSEGAFSYLARDFGLKELYLWPINADQQGTPQQVRKVIDAVRANNI
PVVFSESTISPDPAEQVARETGAKYGGVLYVDSLSEADGPVPTYIDLLRVTSETIAKGLSQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 1e-87 71
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 1e-87 71
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 1e-87 71
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 1e-87 71
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-87 71

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Smed_2914 YP_001328578.1 periplasmic solute binding protein BAC0349 Protein 7e-88 71
Smed_2914 YP_001328578.1 periplasmic solute binding protein BAC0439 Protein 4e-86 69

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Smed_2914 YP_001328578.1 periplasmic solute binding protein VFG0525 Protein 6e-88 71