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Name : xerD (Smed_2567) Accession : YP_001328232.1 Strain : Sinorhizobium medicae WSM419 Genome accession: NC_009636 Putative virulence/resistance : Unknown Product : site-specific tyrosine recombinase XerD Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4974 EC number : - Position : 2663698 - 2664639 bp Length : 942 bp Strand : + Note : site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers d DNA sequence : ATGACGGATCTGTCGGGAGCACACCTCGAAGCCTTCCTGGAAATGATGAGCGCCGAGCGCGGAGCGGCCGTGAACACGCT GCAATCCTATGAGCGGGACCTCAGGGACGCGCGTTCTTTCCTGCGCTCGCGCGGCGTGGGGCTTGTCGACGCCTCGGCCG ACGATCTCCGAAGCTATCTCTCCCACCTCACGGGTGAGGGCTTCAAATCGTCGTCGCAAGCCCGGCGGCTGTCGGCCCTC AGGCAATTCTACAAGTTTCTCTATGCGGAGGGGCTGCGCACGGATGAGCCGACCGGCATCCTTGACGCGCCGAAGAAAAA CCGCGCGCTTCCCAAGACGCTCAGCATCGAAGACGTCACAAGGCTGATCGGCCAGGCGGAGACGGAAGCAGAAAAGGGCG GTGAGGACGCCGTCGCGAAGCTGCGCATGCACGCACTGATCGAACTCCTCTACGCGACCGGCATGCGCGTCAGCGAGCTC GTTTCGCTGCCGGCGAGCGTGCTTGCGCAAGACGGGCGTTTCCTCATAATTCGCGGCAAGGGTAACAAGGAAAGGCTCGT ACCGTTGTCGCAGACGGCGATCCGGGCTATGCGGGCCTATGGCCAAGCACTGCACAGAGAGGCCGACGGCGCCGATAGCC CCTGGTTGTTCCCCTCCTATGGCAGGAACGGGTATCTGCCGCGGCAGGTCTTCGCCCGCGACCTCAAGAGCCTCGCCGCA CGTGCCGGAATTCGCGTCGCGGCGATCTCTCCGCACGTGCTGCGACACGCCTTCGCGAGCCATCTTCTCGCCAACGGCGC CGACCTTCGCGCCGTGCAGGAACTGCTCGGCCATTCGGACATTTCCACCACACAAATCTATACGCATGTGCTGGAAGAAC GGCTTCACGACCTCGTGCAAAGCCATCACCCCCTTGCCAAACAGGCGAAAAAGCAGGATTAG Protein sequence : MTDLSGAHLEAFLEMMSAERGAAVNTLQSYERDLRDARSFLRSRGVGLVDASADDLRSYLSHLTGEGFKSSSQARRLSAL RQFYKFLYAEGLRTDEPTGILDAPKKNRALPKTLSIEDVTRLIGQAETEAEKGGEDAVAKLRMHALIELLYATGMRVSEL VSLPASVLAQDGRFLIIRGKGNKERLVPLSQTAIRAMRAYGQALHREADGADSPWLFPSYGRNGYLPRQVFARDLKSLAA RAGIRVAAISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHDLVQSHHPLAKQAKKQD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00307 | YP_008207772.1 | Site-specific recombinase XerD | Not tested | AbaR25 | Protein | 2e-37 | 44 |
| BJAB0868_00311 | YP_008211637.1 | Site-specific recombinase XerD | Not tested | AbaR26 | Protein | 2e-37 | 44 |
