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Name : fliI (Smed_0253) Accession : YP_001325947.1 Strain : Sinorhizobium medicae WSM419 Genome accession: NC_009636 Putative virulence/resistance : Virulence Product : flagellum-specific ATP synthase Function : - COG functional category : N : Cell motility COG ID : COG1157 EC number : - Position : 276048 - 277451 bp Length : 1404 bp Strand : + Note : involved in type III protein export during flagellum assembly DNA sequence : ATGGCACGTGAAGCCACTGAAAAATCTGCGGCATCGACGTCGCTGGCGGCGCTCGCCGGATTGGTCGAGCGCTATGCGAA CCCTGAATTCGCCATCGCGCCCGGGGGTCATGTCCAGACGATCTCTCCCGGGCATTACACCGTCAGCGGTCTGTCGCGGC ACGTTCGGCTTGGCGACTTCGTCGCGCATAAGAGCGCAACCGGAACCCATCTCGGCGAAGTCGTCCGCGTCGAGCCCGAG CGGGTGGTCGTCTGCCCGATCGAACCCGGGGACCCGATCGGCATCCATGATATCGTCATTCGCAAGGGTGCCTTCCGCAT AGCGCCGACCGACAAGTGGTGCGGCCGCACCATCAACGCGCTGGCCGAGCCGATAGACAGTCTGGGTGTGCTGCTGCAGG GCGACGTCCGCCGCTCGATCGCGAACGTGGCGCCCCCTTCCATGACACGCAAGCGGGTGGAGCACGGATTCAAGACGGGT GTGCGGGCGATAGACATCTTCTCCCCGCTCTGCCTCGGACAGCGCCTCGGCATCTTCGCAGGCTCCGGCGTCGGCAAGTC GACGCTGCTCTCCATGCTGGCGCGGGCCGACGCCTTCGACAAAGTGGTGATCGCGCTGGTGGGCGAGCGCGGCCGTGAGG TGCGCGAATTCATCGAAGACACGCTCGGCAGCAATCTCTCGAAATCCGTCGCCGTGGTCGCTACCAGCGACGAGAGTCCC ATGCTTCGGAAGATGGCACCGCTGACCGCGGTGACGATCGCCGAACATTATCGCGATCAGGGCGACAACGTGCTGCTGAT CGTCGACAGCGTTACCCGTTTTGCCCATGCGATTCGTGAGGTGGCGACCGCTGCGGGGGAGCCGCCGATCGCCCGCGGCT ATCCCGCATCCGTCTTCACCGAACTGCCTCGGCTGCTCGAGCGCGCCGGACCCGGCGCGGAGGGGACCGGTACGATCACC GCCATCATTTCGATCCTGGTCGACGGGGACAACCACAACGACCCGGTCGCCGACTCGGCGCGCGGCATTCTCGACGGGCA CATCGTTCTCGAACGCAGCCTTGCCGAAGAGGGTCGCTACCCTCCCGTCAATCCGCTTTCTTCCATCTCGCGTCTTGCCA GAAAGGCCTGGACGCCGGATCAGGAGAAGCTCGTTGCCCGGCTGAAATCCCTGATCCACCGCTTCGAGGAGACCCGCGAT CTCAGGCTGATCGGCGGCTACCGTCCCGGCGGCGACGCCGACCTCGACATGGCGATCAGGCAGGTCCCGGTTATCTACGA CGTACTGATGCAGACACCCGGCGAGAGGCCCGCCTTCGACGCGTTCACGGACCTCGCCAACGCCTTGAAGGCGGCCGCGA CGGGCAATCAGCCGGGCGGCGCCGGTCCGCGCGGAAGGGGATGA Protein sequence : MAREATEKSAASTSLAALAGLVERYANPEFAIAPGGHVQTISPGHYTVSGLSRHVRLGDFVAHKSATGTHLGEVVRVEPE RVVVCPIEPGDPIGIHDIVIRKGAFRIAPTDKWCGRTINALAEPIDSLGVLLQGDVRRSIANVAPPSMTRKRVEHGFKTG VRAIDIFSPLCLGQRLGIFAGSGVGKSTLLSMLARADAFDKVVIALVGERGREVREFIEDTLGSNLSKSVAVVATSDESP MLRKMAPLTAVTIAEHYRDQGDNVLLIVDSVTRFAHAIREVATAAGEPPIARGYPASVFTELPRLLERAGPGAEGTGTIT AIISILVDGDNHNDPVADSARGILDGHIVLERSLAEEGRYPPVNPLSSISRLARKAWTPDQEKLVARLKSLIHRFEETRD LRLIGGYRPGGDADLDMAIRQVPVIYDVLMQTPGERPAFDAFTDLANALKAAATGNQPGGAGPRGRG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcN | YP_198730.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 1e-63 | 47 |
| hrpB6 | BAB07852.1 | HrpB6 | Virulence | Hrp PAI | Protein | 9e-64 | 47 |
| hrpB6 | AAF61281.1 | HrpB6 | Virulence | Hrp PAI | Protein | 9e-64 | 47 |
| XC_3006 | YP_244074.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 1e-62 | 47 |
| hrcN | NP_636610.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 1e-62 | 47 |
| hrcN | NP_640767.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 1e-62 | 47 |
| hrcN | AAP34339.1 | HrcN | Virulence | Hrp PAI | Protein | 2e-63 | 47 |
| hrcN | YP_362163.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 3e-63 | 46 |
| hrpB6 | AAB08461.1 | HrpB6 | Virulence | Hrp PAI | Protein | 2e-63 | 46 |
| escN | AAC38383.1 | EscN | Virulence | LEE | Protein | 4e-58 | 45 |
| unnamed | AAL06369.1 | EscN | Virulence | LEE | Protein | 2e-58 | 45 |
| unnamed | ACU09458.1 | type III secretion apparatus H+-transporting two-sector ATPase | Virulence | LEE | Protein | 2e-57 | 44 |
| escN | YP_003223475.1 | translocator EscN | Virulence | LEE | Protein | 1e-56 | 44 |
| escN | YP_003236088.1 | translocator EscN | Virulence | LEE | Protein | 2e-57 | 44 |
| escN | NP_290268.1 | hypothetical protein | Virulence | LEE | Protein | 2e-57 | 44 |
| ECs4568 | NP_312595.1 | EscN | Virulence | LEE | Protein | 2e-57 | 44 |
| escN | CAI43874.1 | EscN protein | Virulence | LEE | Protein | 8e-57 | 44 |
| escN | AAC31513.1 | L0034 | Virulence | LEE | Protein | 2e-57 | 44 |
| escN | YP_003232153.1 | T3SS structure protein EscN | Virulence | LEE | Protein | 3e-56 | 44 |
| escN | AAK26715.1 | EscN | Virulence | LEE | Protein | 4e-56 | 44 |
| escN | AAL57542.1 | EscN | Virulence | LEE | Protein | 4e-56 | 44 |
| escN | CAC81862.1 | EscN protein | Virulence | LEE II | Protein | 2e-56 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| fliI | YP_001325947.1 | flagellum-specific ATP synthase | VFG2144 | Protein | 1e-62 | 47 |
| fliI | YP_001325947.1 | flagellum-specific ATP synthase | VFG0048 | Protein | 4e-63 | 47 |
| fliI | YP_001325947.1 | flagellum-specific ATP synthase | VFG0390 | Protein | 4e-61 | 46 |
| fliI | YP_001325947.1 | flagellum-specific ATP synthase | VFG0730 | Protein | 2e-58 | 45 |
| fliI | YP_001325947.1 | flagellum-specific ATP synthase | VFG2331 | Protein | 2e-62 | 45 |
| fliI | YP_001325947.1 | flagellum-specific ATP synthase | VFG0812 | Protein | 9e-58 | 44 |
| fliI | YP_001325947.1 | flagellum-specific ATP synthase | VFG1254 | Protein | 8e-64 | 43 |
