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Name : Smed_2519 (Smed_2519) Accession : YP_001328184.1 Strain : Sinorhizobium medicae WSM419 Genome accession: NC_009636 Putative virulence/resistance : Resistance Product : Bcr/CflA subfamily drug resistance transporter Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG2814 EC number : - Position : 2616683 - 2617882 bp Length : 1200 bp Strand : + Note : TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sme:SMc00744 putative transport protein transmembrane DNA sequence : ATGTCTTCAAAGCCACATGTCTGGCGCTATTCGCTGCCGGCAGCGCTGCTGCTGATGGCGCCCTTCGATATCCTCGCCTC CCTGGCCATGGATATCTATCTCCCCATCGTTCCGGCGATGCCGGGCATTCTCGGGACCAGCCCCGCCGTGGTGCAGCTCA CGCTGAGCCTCTATGTGGTCATGCTCGGCCTCGGCCAGATCGTCTTCGGGCCTCTCTCCGATCGCATCGGACGACGGCCC GTGCTCATCGGCGGAGCGATGCTTTTCGCCGCGGCTTCGTTCTGCCTTGCGGCATCATCCAGCGCCATTCCTTTCGTCGC CTTCCGCTTCCTGCAGGCGATTGGCGCATCTGCGGCCCTGGTGGCCACCTTCTCGACTATTCGGGATGTATATGGCAATC GCCCTGAAAGCGTGGTCATCTACAGCCTGTTCAGTTCCATCCTGGCATTCGTGCCGGCTCTGGGGCCGATCGCCGGTGCC GCGCTGGCGGAGAGGTTCGGATGGCGCTCGATCTTCGTGACACTGGGCGCATTTGCCGTAATCGCGCTGCTGCAGGCCTT GCCCCGGTGGCATGAATCTCGCCCTTCGGCGCCCGCGCCGTCGCGGCACGCATTCGGGCCGCTTCTCCGCAGCCTCGCCT TCTGGACCTATACTCTCGGCTTCAGCGCCGCCATGGGCACCTTCTTCGTGTTCTTTTCCACCTCACCGCGCGTGCTGATC GGCAAGGCAGGATATTCGGAGCTTCAGTTCAGCCTCGCCTTTGCCACCGTCGCGGCCGTCATGATCTTCACGGCGCGCTT TGCCAAGCAGTTTGTCTTCCGATGGGGAACTTCGGGCAGCCTCCTGCGGGGCATGTGCATGTTGCTCCTCGGGGCGGCAC TCCTGGCTGCCGGGCAAGGCCTCGGCACCCCTTCGTCCTGGGTCTTCATCGCGCCCATGTGGGTCATGGCCGTCGGCATC GTCTTCACGGTGTCGGTAACCGCGAACGGCGCTCTCAAGGATTTTGGAGACATGGCGGGTTCGGCGGTCGCAGTCTATTT CTGCGTCCAAAGCCTCATCGTCGCGACGGCGGGGACACTGCTCGTGATCGCACTGCCCGGCGACACCGCATGGCCGCTTG CGGCCTATGCCTCGATCATGGCCGGTATCGTGCTGATCGCGCGCCGGCAGCTGCATTCCGGAAGGCAGCCGCAGACATGA Protein sequence : MSSKPHVWRYSLPAALLLMAPFDILASLAMDIYLPIVPAMPGILGTSPAVVQLTLSLYVVMLGLGQIVFGPLSDRIGRRP VLIGGAMLFAAASFCLAASSSAIPFVAFRFLQAIGASAALVATFSTIRDVYGNRPESVVIYSLFSSILAFVPALGPIAGA ALAERFGWRSIFVTLGAFAVIALLQALPRWHESRPSAPAPSRHAFGPLLRSLAFWTYTLGFSAAMGTFFVFFSTSPRVLI GKAGYSELQFSLAFATVAAVMIFTARFAKQFVFRWGTSGSLLRGMCMLLLGAALLAAGQGLGTPSSWVFIAPMWVMAVGI VFTVSVTANGALKDFGDMAGSAVAVYFCVQSLIVATAGTLLVIALPGDTAWPLAAYASIMAGIVLIARRQLHSGRQPQT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| floR | YP_005176183.1 | florfenicol / chloramphenicol efflux protein | Not tested | ICEPmu1 | Protein | 5e-98 | 68 |
| flo | AAK02049.1 | chloramphenicol and florfenicol resistance protein | Not tested | SGI1 | Protein | 1e-99 | 65 |
| floRc | AGK06972.1 | chloramphenicol and florfenicol resistance protein | Not tested | SGI1 | Protein | 1e-99 | 65 |
| floRc | AGK07102.1 | chloramphenicol and florfenicol resistance protein | Not tested | SGI1 | Protein | 1e-99 | 65 |
| cmlA9 | ABZ01840.1 | CmlA9 chloramphenicol efflux protein | Not tested | SGI2 | Protein | 1e-99 | 65 |
| cmlA | CAJ77032.1 | chloramphenicol and florfenicol resistance protein | Not tested | AbaR1 | Protein | 1e-99 | 65 |
| cml(A)5 | ACY75522.1 | CmLA(5) | Not tested | Tn6060 | Protein | 7e-74 | 49 |
| cmlA5 | CAJ77046.1 | Chloramphenicol resistance protein | Not tested | AbaR1 | Protein | 3e-73 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Smed_2519 | YP_001328184.1 | Bcr/CflA subfamily drug resistance transporter | DQ984668.gene.p01 | Protein | 4e-74 | 49 |
| Smed_2519 | YP_001328184.1 | Bcr/CflA subfamily drug resistance transporter | AF156486.gene.p01 | Protein | 2e-72 | 49 |
| Smed_2519 | YP_001328184.1 | Bcr/CflA subfamily drug resistance transporter | DQ522237.1.gene4.p01 | Protein | 4e-74 | 49 |
| Smed_2519 | YP_001328184.1 | Bcr/CflA subfamily drug resistance transporter | NC_010410.6003586.p0 | Protein | 4e-74 | 49 |
| Smed_2519 | YP_001328184.1 | Bcr/CflA subfamily drug resistance transporter | AF294653.1.gene4.p01 | Protein | 6e-74 | 48 |
