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Name : ureC (Smed_2383) Accession : YP_001328050.1 Strain : Sinorhizobium medicae WSM419 Genome accession: NC_009636 Putative virulence/resistance : Virulence Product : urease subunit alpha Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG0804 EC number : - Position : 2461200 - 2462912 bp Length : 1713 bp Strand : - Note : ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alp DNA sequence : ATGTCCTACAAAATGTCGCGTGCGGCCTATGCCAACATGTTCGGTCCGACCGTGGGCGACAAGGTGCGGTTGGCCGATAC CGAACTCTTCATCGAGGTGGAAAGGGATTTCACCACCCATGGCGAGGAGGTGAAGTTCGGGGGCGGCAAAGTCATCCGCG ACGGCATGGGCCAAAGCCAGGTGACCCGCGAAGGCGGTGCGGTCGACACGGTGATCACCAATGCATTGATCGTCGATCAT TGGGGGATCGTGAAGGCGGATATCGGACTGAAGGACGGGCGCATCTCGGCAATAGGGAAGGCCGGCAATCCCGACACGCA GGCCGGTGTCACCATCATCGTCGGCCCGGGCACGGAGGTCATTGCGGGCGAGGGCAAGATCGTCACGGCGGGGGGCATGG ACAGCCATATCCACTTCATCTGCCCGCAACAGATCGACGAGGCGCTGATGAGCGGTATCACCTGCATGCTCGGCGGCGGA ACGGGGCCGGCGCACGGCACGCTCGCCACGACCTGCACGCCGGGCCCCTGGCACATCGCCCGCATGATTGAAGCGGCGGA TGCCTTTCCCATGAATCTCGCCTTTGCCGGAAAGGGCAATGCGTCGCTGCCCGGCGCACTCGTGGAAATGGTGCTGGGCG GCGCCACCTCGCTGAAGCTCCACGAGGACTGGGGCACCACACCGGCAGCCATCGATTGCTGCCTTTCGGTTGCGGACGAA TACGACGTGCAGGTGATGATCCACACGGATACGCTGAACGAAAGCGGCTTCGTCGAGGATACGATTGCTGCGATAAAGGG CAGGACGATCCATGCCTATCACACGGAAGGGGCTGGCGGCGGCCACGCGCCGGATATCATCAGGATCTGCGGCCAGCCGA ACGTCATCCCGTCCTCGACCAATCCGACGCGGCCTTATACCGTGAACACGCTGGCTGAACATCTGGACATGCTGATGGTC TGCCATCACCTGTCTCCCAGCATTCCGGAAGACATCGCCTTCGCCGAAAGCCGTATCCGCAAGGAGACTATCGCGGCGGA AGATATCCTCCACGACATCGGCGCCTTCTCGATCATTTCTTCCGACAGCCAGGCGATGGGGCGCGTCGGCGAGGTGGCGA TCCGCACCTGGCAGACCGCCGACAAGATGAAGCGCCAGCGTGGGCGGCTCAAGGAGGAGAGCGGCGGGAATGACAATTTC CGCGTCAAGCGCTACATCGCCAAATACACGATCAACCCGGCGATCGCCCATGGCCTCAGCCATGAGATCGGCTCTCTCGA AACCGGCAAGCGCGCCGATCTCGTCCTGTGGAATCCAACCTTCTTCGGCGTGAAGCCCGACATGGTGCTGCTGGGCGGAA CGATCGCCGCAGCACCGATGGGGGATCCAAACGCCTCGATTCCCACTCCGCAGCCGGTCCATTATCGGCCAATGTTCGGC GCCTATGGAAAGAGCCGGACCAACTCCTCGGTCACTTTCGTTTCGCAGGCCTCGCTCGATGCGGGGCTCGCCGGCAGGCT TGGCGTCGCCAAGGCGCTCGTTGCCGTCCAGAACACCCGCGGCGGCATCGGCAAGGCGTCGATGGTCCACAACAGCCTCA CGCCACATATCGAGGTCGACCCCGAAACCTACGAGGTTCGCGCCAACGGCGAGCTCCTCACCTGCGAGCCGGCGTCGGTA CTGCCAATGGCGCAGCGCTATTTCTTGTTCTAG Protein sequence : MSYKMSRAAYANMFGPTVGDKVRLADTELFIEVERDFTTHGEEVKFGGGKVIRDGMGQSQVTREGGAVDTVITNALIVDH WGIVKADIGLKDGRISAIGKAGNPDTQAGVTIIVGPGTEVIAGEGKIVTAGGMDSHIHFICPQQIDEALMSGITCMLGGG TGPAHGTLATTCTPGPWHIARMIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADE YDVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTNPTRPYTVNTLAEHLDMLMV CHHLSPSIPEDIAFAESRIRKETIAAEDILHDIGAFSIISSDSQAMGRVGEVAIRTWQTADKMKRQRGRLKEESGGNDNF RVKRYIAKYTINPAIAHGLSHEIGSLETGKRADLVLWNPTFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFG AYGKSRTNSSVTFVSQASLDAGLAGRLGVAKALVAVQNTRGGIGKASMVHNSLTPHIEVDPETYEVRANGELLTCEPASV LPMAQRYFLF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ureC | NP_286680.1 | urease subunit alpha | Virulence | TAI | Protein | 0.0 | 70 |
| ureC | NP_287088.1 | urease subunit alpha | Not tested | TAI | Protein | 0.0 | 70 |
| ureC | YP_005686358.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 4e-163 | 61 |
| ureC | YP_005684266.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 1e-161 | 61 |
| ureC | YP_005682174.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 4e-163 | 61 |
| ureC | YP_003784325.1 | urease subunit alpha | Not tested | PiCp 7 | Protein | 4e-163 | 61 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ureC | YP_001328050.1 | urease subunit alpha | VFG0270 | Protein | 1e-163 | 62 |
