|
Name : Smed_2188 (Smed_2188) Accession : YP_001327856.1 Strain : Sinorhizobium medicae WSM419 Genome accession: NC_009636 Putative virulence/resistance : Virulence Product : ABC transporter-like protein Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG3842 EC number : - Position : 2264202 - 2265197 bp Length : 996 bp Strand : + Note : PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sme:SMc01653 putative ATP-binding ABC transporter protein DNA sequence : ATGACCGCCGTTTTCTTCGACAATGTATCCCGCTATTTTGGCGCAGTACGTGCCGTTGATCGCGTGCACCTCACGATCGC CGAGGGAGAGTTCTTCGCGATGCTCGGTCCCTCGGGATCGGGGAAGACCACATGCCTGAGGCTGATGGCCGGCTTCGAGC AGCCGACGGGCGGGCACATCGAGATATTCGGCGAGACTGCCGAAGGCGTGCCGCCCTATCGCCGCAGCGTCAATACCGTC TTCCAGGACTACGCCCTTTTTCCGCATCTCTCCATTCTCGACAATGTCGCCTATGGGCTGATGGTCAAGGGCATCGGACG GGAGGAACGCCGCAAGGCGGCCGAGGACGCGCTCGCCATGGTGAAACTGCCGGGATACGGCACGCGCCGGCCCGGGCAGC TTTCCGGCGGTCAGCGCCAGCGCGTCGCCCTCGCCCGCGCGCTCGTCAATAAACCCAAGGTCCTGCTTCTCGACGAGCCG CTCGGCGCACTCGACCTGAAGCTGCGCGAACAAATGCAGGAGGAGTTGAAGATCTTGCAGAAGTCGCTCGGCATCACCTT CGTTTTCGTCACCCATGATCAGGGCGAGGCGCTTTCGATGGCCGACCGGATCGCCGTTTTCAACGAGGGCCGCATACAGC AGCTCGGAAGCCCGGAAGAGGTCTATAACCGTCCGCAGACCCGTTTCGTTGCCGATTTTGTCGGCTCCTCCAACGTCCTT TCTGAAGATCTCTGCCGCAGCCTGGGCCTGAAGGCTTCCTTCGCAAGCCTTCGCCCCGAGGCCGTGGCCATCGCGCCGCC GAGCGAGGGAGCGCTGAGTCTCGCCGGCACCGTCGCTTCGCAGAGCTTCCTTGGCGCCACCAACCGCATCGTGATCGATG TCGAGGGTGTCCGGATTGCGGTGGCCAGCCCGGCGGCGCGCGGCGTTCCGGCGGTCGGCAGCCCGGTTACGATCAGCTTC GCGGCGCACGATCTCCATCCGATGGAGGACGCATGA Protein sequence : MTAVFFDNVSRYFGAVRAVDRVHLTIAEGEFFAMLGPSGSGKTTCLRLMAGFEQPTGGHIEIFGETAEGVPPYRRSVNTV FQDYALFPHLSILDNVAYGLMVKGIGREERRKAAEDALAMVKLPGYGTRRPGQLSGGQRQRVALARALVNKPKVLLLDEP LGALDLKLREQMQEELKILQKSLGITFVFVTHDQGEALSMADRIAVFNEGRIQQLGSPEEVYNRPQTRFVADFVGSSNVL SEDLCRSLGLKASFASLRPEAVAIAPPSEGALSLAGTVASQSFLGATNRIVIDVEGVRIAVASPAARGVPAVGSPVTISF AAHDLHPMEDA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| opuBA | YP_005124363.1 | choline transport system ATP-binding protein | Not tested | Not named | Protein | 3e-25 | 41 |
| opuBA | NP_938494.1 | choline transport system ATP-binding protein | Not tested | Not named | Protein | 4e-26 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Smed_2188 | YP_001327856.1 | ABC transporter-like protein | VFG1206 | Protein | 6e-28 | 42 |
